|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
235-850 |
0e+00 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 593.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM--YNLGVAYGE 312
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL----------------------------- 443
Cdd:COG3914 171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLfalrqacdwevydrfeellaalargpsel 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 444 --LAMNYINEGHDDKLFEAHRDWGKRFMR-LYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKV 520
Cdd:COG3914 251 spFALLYLPDDDPAELLALARAWAQLVAAaAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLEPLLEHHDRSRFEI 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 521 VVYSAVVKADAKTIRFREKVmkkgGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYP 600
Cdd:COG3914 331 YAYSTGPDDDALTQRLRAAA----DHWRDIPGLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPAPVQVSWLGYP 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 601 NTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTP-----ALTNGFITFGSFNNLAKITPKV 675
Cdd:COG3914 407 GTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYLCYQPNDRAPEVAPLPtradlGLPEGAVVFGSFNNLYKITPEV 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 676 LQVWARILCAVPNSRLVVKCKPFccDSVRHRFLSTLEQLGLESLRVDLLPlILLNHDHMQAYSLMDISLDTFPYAGTTTT 755
Cdd:COG3914 487 FALWARILKAVPNSVLLLKGGGL--PEARERLRAAAAARGVDPDRLIFLP-RLPRAEHLARYALADLFLDTFPYNGGTTT 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 756 CESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 835
Cdd:COG3914 564 LEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFA 643
|
650
....*....|....*
gi 568856313 836 LGLESTYRNMWHRYC 850
Cdd:COG3914 644 RDLEAAYRQMWQRWC 658
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
184-432 |
1.88e-40 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 149.39 E-value: 1.88e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNfeiakn 263
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 264 nmaialtdlgtkvklegdinqgvayykkalyynwhYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 343
Cdd:COG0457 75 -----------------------------------DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 344 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423
Cdd:COG0457 120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
....*....
gi 568856313 424 AYEQCLKID 432
Cdd:COG0457 200 LLALEQALR 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
163-432 |
1.04e-39 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 148.34 E-value: 1.04e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 243 SAIACYERCLAVSPNFEIAKNNMAIALTDlgtkvklEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQ-------EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 323 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTyA 402
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245
|
250 260 270
....*....|....*....|....*....|
gi 568856313 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKID 432
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
222-474 |
2.05e-39 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 146.69 E-value: 2.05e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNfeiaknnmaialtdlgtkvklegdinqgvayykkalyynwhYAD 301
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-----------------------------------------DAE 43
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381
Cdd:COG0457 44 ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461
Cdd:COG0457 124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
250
....*....|...
gi 568856313 462 RDWGKRFMRLYSQ 474
Cdd:COG0457 204 EQALRKKLAILTL 216
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
194-435 |
3.11e-38 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 144.10 E-value: 3.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 274 tkvklegDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
Cdd:COG2956 91 -------LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 354 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
..
gi 568856313 434 DS 435
Cdd:COG2956 244 SD 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
109-327 |
7.84e-36 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 136.29 E-value: 7.84e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568856313 269 LTDLgtkvkleGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327
Cdd:COG0457 154 LEKL-------GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
|
| Glyco_transf_41 |
pfam13844 |
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ... |
488-838 |
2.99e-35 |
|
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.
Pssm-ID: 404688 Cd Length: 543 Bit Score: 141.77 E-value: 2.99e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSavVKADAKTiRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDK 566
Cdd:pfam13844 81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYA--LSPDDGT-NFRSKIARESEHFVDLSQIpCNGKAADRIHADG 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 567 IDILVELTGHT--ANNKLgmMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF------- 637
Cdd:pfam13844 158 IHILVNMNGYTkgARNEI--FALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFfigdhrq 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 638 ----------LCYTPSPEAG-----------------------------------------------PVCPTPALT---- 656
Cdd:pfam13844 236 mfphlkeraiVTDKSDGTKVrdnvavvnatdlkpllektevkdkvkevvvvettgnsrdsskvevvlPVIELPTTEpies 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 657 -----------NGF---------------------------------------ITFGSFNNLAKITPKVLQVWARILCAV 686
Cdd:pfam13844 316 miqsgqiqtsvNGVvvqnglattqtnnkaatgeevpssivvttrqqyglpddaIVYCNFNQLYKIDPPTLEMWVNILKRV 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 687 PNSRLVVKckpfccdsvrhRF--------LSTLEQLGLESLRVDLLPlILLNHDHMQAYSLMDISLDTFPYAGTTTTCES 758
Cdd:pfam13844 396 PNSVLWLL-----------RFpavgepniLATAQELGIPPGRIVFSN-VAPKEEHVRRGQLADVCLDTPLCNGHTTGMDV 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 759 LYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 838
Cdd:pfam13844 464 LWAGTPMVTLPGETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
75-261 |
1.15e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 130.13 E-value: 1.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYkpaae 154
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 155 clAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
Cdd:COG0457 76 --AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
170 180
....*....|....*....|....*..
gi 568856313 235 YKNRGDLESAIACYERCLAVSPNFEIA 261
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
55-324 |
1.37e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.84 E-value: 1.37e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 135 AAESYHKALSADPSYKPAAECLAIVLTDLGtslklagNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEG-------DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLgtkvkleGDINQGVAYYKKALY 294
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL-------GDPEEALELLRKALE 240
|
250 260 270
....*....|....*....|....*....|
gi 568856313 295 YNwHYADAMYNLGVAYGEMLKFDMAIVFYE 324
Cdd:COG2956 241 LD-PSDDLLLALADLLERKEGLEAALALLE 269
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
55-228 |
5.09e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 116.64 E-value: 5.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 135 AAESYHKALSADPSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
Cdd:COG0457 95 ALEDYDKALELDPDD-------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170
....*....|....
gi 568856313 215 EKAALERPMYAEAY 228
Cdd:COG0457 168 EKLEAAALAALLAA 181
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
272-460 |
1.96e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 109.82 E-value: 1.96e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 351
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180
....*....|....*....|....*....
gi 568856313 432 DPDSRNAgqNRLLAMNYINEGHDDKLFEA 460
Cdd:COG2956 174 DPDCARA--LLLLAELYLEQGDYEEAIAA 200
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
300-435 |
1.10e-25 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 103.35 E-value: 1.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568856313 380 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
52-467 |
2.75e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 112.87 E-value: 2.75e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 132 lVEAAESYHKALSADPSYKPAAECL-AIVltdlgtSLKlAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
Cdd:TIGR02917 243 -FEEAEKHADALLKKAPNSPLAHYLkALV------DFQ-KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 211 ---LGCYEKAA----LERPMYAEAYCNM---------------------------GVIYKNRGDLESAIACYERCLAVSP 256
Cdd:TIGR02917 315 yqyLNQILKYApnshQARRLLASIQLRLgrvdeaiatlspalgldpddpaalsllGEAYLALGDFEKAAEYLAKATELDP 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 257 NFEIAKNNMAI----------ALTDLGTKVKLEGD-INQGVAY---------YKKALYY--NW--HYAD--AMYNL-GVA 309
Cdd:TIGR02917 395 ENAAARTQLGIsklsqgdpseAIADLETAAQLDPElGRADLLLilsylrsgqFDKALAAakKLekKQPDnaSLHNLlGAI 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568856313 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQnrLLAMNYINEGHDDKLFEAHRDWGKR 467
Cdd:TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL--MLGRAQLAAGDLNKAVSSFKKLLAL 630
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
261-469 |
5.03e-25 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 104.23 E-value: 5.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFhFNPHCAEACNNL 340
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568856313 421 AIDAYEQCLKIDPDSRNAGQNRLLAmnYINEGHDDKLFEAHRDWGKRFM 469
Cdd:COG4785 160 AIADLEKALELDPNDPERALWLYLA--ERKLDPEKALALLLEDWATAYL 206
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
52-434 |
1.19e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 104.40 E-value: 1.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 52 LSYAnILRSRnKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ----------------- 114
Cdd:TIGR02917 369 LGEA-YLALG-DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPElgradlllilsylrsgq 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 115 -----------------NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVltDLGTslklaGNTQDGI 177
Cdd:TIGR02917 447 fdkalaaakklekkqpdNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI--DIQE-----GNPDDAI 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPn 257
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP- 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 258 feiaKNNMAIALtdLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA- 336
Cdd:TIGR02917 599 ----DSPEAWLM--LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAq 672
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 337 --------CNN-------------------------LGVIYKDRDNLDKAVECYQMALSIKPNfSQSLNNLGVVYTVQGK 383
Cdd:TIGR02917 673 iglaqlllAAKrtesakkiakslqkqhpkaalgfelEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGN 751
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 568856313 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Cdd:TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
319-438 |
3.05e-22 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 93.15 E-value: 3.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 568856313 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
333-462 |
1.25e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 88.71 E-value: 1.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 568856313 413 RDAGSISLAIDAYEQCLKIDPDsrNAGQNRLLAMNYINEGHDDKLFEAHR 462
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPE--HPEAYLRLARAYRALGRPDEAIAALE 130
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
123-258 |
4.66e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.17 E-value: 4.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGtslklagNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-------DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568856313 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
343-436 |
5.14e-20 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 85.61 E-value: 5.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEmIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....
gi 568856313 423 DAYEQCLKIDPDSR 436
Cdd:COG3063 80 AYLERALELDPSAL 93
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
106-447 |
6.55e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 95.54 E-value: 6.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSykpaaecLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
Cdd:TIGR02917 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-------NAAARTQLGISKLSQGDPSEAIADLETAAQ 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Cdd:TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 266 A-IALTdlgtkvklEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
Cdd:TIGR02917 506 ArIDIQ--------EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424
Cdd:TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657
|
330 340
....*....|....*....|....*
gi 568856313 425 YEQCLKIDPDSRNA--GQNRLLAMN 447
Cdd:TIGR02917 658 LKRALELKPDNTEAqiGLAQLLLAA 682
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
157-293 |
8.33e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 86.40 E-value: 8.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 568856313 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLgtkvkleGDINQGVAYYKKAL 293
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL-------GRPDEAIAALEKAL 133
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
334-433 |
8.55e-19 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 84.24 E-value: 8.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413
Cdd:COG5010 54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
|
90 100
....*....|....*....|
gi 568856313 414 DAGSISLAIDAYEQCLKIDP 433
Cdd:COG5010 134 SLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
79-222 |
5.41e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 81.39 E-value: 5.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568856313 159 VLTDlgtslklAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
Cdd:COG4783 81 ALLK-------AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
266-401 |
2.67e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 79.47 E-value: 2.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568856313 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
129-299 |
4.56e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 81.11 E-value: 4.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 129 EGRLVEAAESYHKALSADPSYKPAAE-CLAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
Cdd:COG4785 9 LLALALAAAAASKAAILLAALLFAAVlALAIALADLALaLAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286
Cdd:COG4785 89 YDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168
|
170
....*....|....
gi 568856313 287 AYYKKALY-YNWHY 299
Cdd:COG4785 169 ELDPNDPErALWLY 182
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
287-399 |
2.97e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 76.92 E-value: 2.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
Cdd:COG5010 41 ELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
|
90 100 110
....*....|....*....|....*....|...
gi 568856313 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399
Cdd:COG5010 121 NPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
352-466 |
4.11e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.81 E-value: 4.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 568856313 432 DPDSRNAgqNRLLAMNYINEGHDDklfEAHRDWGK 466
Cdd:COG4235 81 DPDNPEA--LYLLGLAAFQQGDYA---EAIAAWQK 110
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
55-149 |
9.10e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 81.96 E-value: 9.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
|
90
....*....|....*
gi 568856313 135 AAESYHKALSADPSY 149
Cdd:COG3914 199 AIAAYRRALELDPDN 213
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
177-293 |
9.29e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 9.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110
....*....|....*....|....*....|....*..
gi 568856313 257 NFEIAKNNMAIALTDlgtkvklEGDINQGVAYYKKAL 293
Cdd:COG4235 83 DNPEALYLLGLAAFQ-------QGDYAEAIAAWQKLL 112
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
78-466 |
1.14e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.67 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS--------- 148
Cdd:TIGR02917 18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPknqvlplla 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 149 -------------------YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209
Cdd:TIGR02917 98 rayllqgkfqqvldelpgkTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDL-GTKVKLEGDI--- 282
Cdd:TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNiavLLALATILIEAGEFeEAEKHADALLkka 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 283 -NQGVAYYKKAL--YYNWHYADAMYNLGVA------YGEMLKFDMAIVFY----ELAF-HFN------PHCAEACNNLGV 342
Cdd:TIGR02917 258 pNSPLAHYLKALvdFQKKNYEDARETLQDAlksapeYLPALLLAGASEYQlgnlEQAYqYLNqilkyaPNSHQARRLLAS 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422
Cdd:TIGR02917 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 568856313 423 DAYEQCLKIDPDSRNAGqnRLLAMNYINEGHDDKLFEAHRDWGK 466
Cdd:TIGR02917 418 ADLETAAQLDPELGRAD--LLLILSYLRSGQFDKALAAAKKLEK 459
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
135-256 |
1.34e-15 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 75.00 E-value: 1.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 568856313 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
Cdd:COG5010 112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
170-257 |
3.73e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.74 E-value: 3.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGcYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
....*...
gi 568856313 250 RCLAVSPN 257
Cdd:COG3063 84 RALELDPS 91
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
300-454 |
5.20e-15 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 75.45 E-value: 5.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379
Cdd:TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568856313 380 VQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAgqNRLLAMNYINEGHD 454
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES--LLELAELYYLRGQY 185
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
101-257 |
7.10e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.96 E-value: 7.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQKY 180
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------ADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568856313 181 YEALKIDPHYAPAYYNLGVVYSElmqydtalgcyekaalerpmyaeaycnmgviyknRGDLESAIACYERCLAVSPN 257
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQ----------------------------------QGDYAEAIAAWQKLLALLPA 117
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
309-399 |
8.04e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 70.58 E-value: 8.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEcYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 568856313 389 EMIEKAIAANP 399
Cdd:COG3063 80 AYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
52-190 |
1.63e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.38 E-value: 1.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568856313 132 LVEAAESYHKALSADPSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
Cdd:COG4783 88 YDEALALLEKALKLDPEH-------PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
210-331 |
5.28e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.65 E-value: 5.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLgtkvkleGDINQGVAYY 289
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAA-------GDTEEAEELL 74
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 568856313 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
55-153 |
1.99e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.11 E-value: 1.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....*....
gi 568856313 135 AAESYHKALSADPSYKPAA 153
Cdd:COG4235 104 AIAAWQKLLALLPADAPAR 122
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
111-293 |
2.13e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 70.33 E-value: 2.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL-------AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKnRGDLESAIACYERclavspnfEIAKNNMAialt 270
Cdd:COG4785 141 AYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER-KLDPEKALALLLE--------DWATAYLL---- 207
|
170 180
....*....|....*....|...
gi 568856313 271 dlgtkvklEGDINQGVAYYKKAL 293
Cdd:COG4785 208 --------QGDTEEARELFKLAL 222
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
167-293 |
5.03e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 67.68 E-value: 5.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
Cdd:COG5010 30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 568856313 247 CYERCLAVSPNFEIAKNNMAIALtdlgtkvKLEGDINQGVAYYKKAL 293
Cdd:COG5010 110 YYEKALALSPDNPNAYSNLAALL-------LSLGQDDEAKAALQRAL 149
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
128-360 |
5.35e-13 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 69.57 E-value: 5.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDphYAPAYYNLGVVYSELMQ- 206
Cdd:COG0790 2 ALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAG--GAEAQYNLGLMYAEGRGv 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 207 ---YDTALGCYEKAALERpmYAEAYCNMGVIYKN-RG---DLESAIACYERclAVSPNFEIAKNNMAIALTDlGTKVklE 279
Cdd:COG0790 80 pkdYEKALEWFEKAAEQG--DAEAQYNLGLMYEEgLGvpqDYAKALEWYEK--AAEQGDADAQYNLGLLYLN-GEGV--P 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 280 GDINQGVAYYKKAlyYNWHYADAMYNLGVAY--GEMLKFDM--AIVFYELAFHFNphCAEACNNLGVIYKDRD----NLD 351
Cdd:COG0790 153 KDPAKAAEWYRKA--AEQGDADAQYNLGVLYenGRGVPKDPakALEWYRKAAEQG--DADAQYNLGRLYLNGEgvekDLE 228
|
....*....
gi 568856313 352 KAVECYQMA 360
Cdd:COG0790 229 KALRWLRKA 237
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
66-217 |
5.89e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.57 E-value: 5.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNacahthcgilykdegrlveaaesyhkalsa 145
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------------------------------ 50
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568856313 146 dpsykpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
Cdd:COG4235 51 -----------ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
212-456 |
8.73e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.42 E-value: 8.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 212 GCYEKAALErpMYAEAycnmgVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMAialtdlgtkvklEGDINQGV 286
Cdd:TIGR02917 16 ACGDQSPEE--LIEAA-----KSYLQKNKYKAAIIQLKNALQKDPNdaearFLLGKIYLA------------LGDYAAAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
Cdd:TIGR02917 77 KELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLdELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
Cdd:TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236
|
250
....*....|.
gi 568856313 446 MnyINEGHDDK 456
Cdd:TIGR02917 237 L--IEAGEFEE 245
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
124-223 |
1.36e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.52 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 124 ILYKDEGRLVEAAESYHKALSADPSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNN-------PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
90 100
....*....|....*....|
gi 568856313 204 LMQYDTALGCYEKAALERPM 223
Cdd:COG5010 135 LGQDDEAKAALQRALGTSPL 154
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
125-222 |
1.36e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.42 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 125 LYKDEGRLVEAAESYHKALSADPSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQkYYEALKIDPHYAPAYYNLGVVYSEL 204
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN-------ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
90
....*....|....*...
gi 568856313 205 MQYDTALGCYEKAALERP 222
Cdd:COG3063 73 GDYDEALAYLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
200-293 |
1.43e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.42 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAcYERCLAVSPNFEIAKNNMAIALTDLgtkvkle 279
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL------- 72
|
90
....*....|....
gi 568856313 280 GDINQGVAYYKKAL 293
Cdd:COG3063 73 GDYDEALAYLERAL 86
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
376-456 |
3.95e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.98 E-value: 3.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNrlLAMNYINEGHDD 455
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN--LAALLLSLGQDD 139
|
.
gi 568856313 456 K 456
Cdd:COG5010 140 E 140
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
178-331 |
4.83e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.98 E-value: 4.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568856313 258 FEIAKNNMAIALTDLgtkvkleGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
Cdd:COG5010 87 NPELYYNLALLYSRS-------GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
280-366 |
5.39e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.88 E-value: 5.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFyELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
....*..
gi 568856313 360 ALSIKPN 366
Cdd:COG3063 85 ALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
280-365 |
1.23e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.83 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
....*.
gi 568856313 360 ALSIKP 365
Cdd:COG5010 148 ALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
377-466 |
2.51e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 2.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIdAYEQCLKIDPDSRNAGQNrlLAMNYINEGHDDk 456
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLN--LAELLLELGDYD- 76
|
90
....*....|
gi 568856313 457 lfEAHRDWGK 466
Cdd:COG3063 77 --EALAYLER 84
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
49-154 |
4.84e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.87 E-value: 4.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
Cdd:COG0457 74 DDAEALNNlglALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
90 100
....*....|....*....|....*....
gi 568856313 126 YKDEGRLVEAAESYHKALSADPSYKPAAE 154
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAALAALLAAA 182
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
50-147 |
7.28e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.51 E-value: 7.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129
Cdd:COG5010 56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
90
....*....|....*...
gi 568856313 130 GRLVEAAESYHKALSADP 147
Cdd:COG5010 136 GQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
57-148 |
8.33e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.41 E-value: 8.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDsFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 568856313 137 ESYHKALSADPS 148
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
191-304 |
7.69e-10 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 58.92 E-value: 7.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 191 APAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYC--NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
Cdd:PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEAlKLEEDPNDRSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114
|
90 100 110
....*....|....*....|....*....|....*..
gi 568856313 268 ALTDLGTKVKLEGDINQGVAYYKKALYYnWHYADAMY 304
Cdd:PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEY-WKQAIRLA 150
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
54-187 |
1.04e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568856313 134 EAAESYHKALSADPSykpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
Cdd:COG2956 230 EALELLRKALELDPS--------DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
240-414 |
1.34e-09 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 59.56 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQGVAYYKKAlyYNWHYADAMYNLGVAY--GEM 313
Cdd:COG0790 37 AAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGlmyaEGRGVPKDYEKALEWFEKA--AEQGDAEAQYNLGLMYeeGLG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 314 LKFDM--AIVFYELAfhfnphC----AEACNNLGVIYKDRD----NLDKAVECYQMAlsIKPNFSQSLNNLGVVY----T 379
Cdd:COG0790 115 VPQDYakALEWYEKA------AeqgdADAQYNLGLLYLNGEgvpkDPAKAAEWYRKA--AEQGDADAQYNLGVLYengrG 186
|
170 180 190
....*....|....*....|....*....|....*
gi 568856313 380 VQGKMDAAAEMIEKAIAANptYAEAYNNLGVLYRD 414
Cdd:COG0790 187 VPKDPAKALEWYRKAAEQG--DADAQYNLGRLYLN 219
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
67-188 |
2.40e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.89 E-value: 2.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146
Cdd:COG5010 39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 568856313 147 PSYkpaaeclAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
Cdd:COG5010 119 PDN-------PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
193-254 |
3.02e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.32 E-value: 3.02e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 193 AYYNLGVVYSELMQYDTALGCYEKAAL--------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
110-291 |
3.53e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.12 E-value: 3.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 110 KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLgtslklaGNTQDGIQKYYEALKIDP 188
Cdd:TIGR02521 24 TTDRNKAAkIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-------GELEKAEDSFRRALTLNP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 189 HYAPAYYNLGVVYSELMQYDTALGCYEKaALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Cdd:TIGR02521 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQ-AIEDPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175
|
170 180
....*....|....*....|....*..
gi 568856313 266 AialtdlgtKVKLE-GDINQGVAYYKK 291
Cdd:TIGR02521 176 A--------ELYYLrGQYKDARAYLER 194
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
49-199 |
4.57e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.62 E-value: 4.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
Cdd:COG4785 71 DLAQLYyerGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568856313 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDgIQKYYEALKiDPHYAPAYYNLGV 199
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLED-WATAYLLQG-DTEEARELFKLAL 222
|
|
| gliding_GltE |
NF033758 |
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ... |
357-462 |
4.84e-09 |
|
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.
Pssm-ID: 468174 [Multi-domain] Cd Length: 411 Bit Score: 59.45 E-value: 4.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDsr 436
Cdd:NF033758 75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPD-- 152
|
90 100
....*....|....*....|....*.
gi 568856313 437 NAGQNRLLAMNYINEGHDDKLFEAHR 462
Cdd:NF033758 153 DASSRARLAEIYRQTGDHDKAMELSR 178
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
261-414 |
6.80e-09 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 57.63 E-value: 6.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWhyADAMYNLGVAY--GEMLKFDM--AIVFYELAFHFNphCAEA 336
Cdd:COG0790 26 GAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGG--AEAQYNLGLMYaeGRGVPKDYekALEWFEKAAEQG--DAEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 337 CNNLGVIYKDRD----NLDKAVECYQMAlsIKPNFSQSLNNLGVVY----TVQGKMDAAAEMIEKAIAANptYAEAYNNL 408
Cdd:COG0790 102 QYNLGLMYEEGLgvpqDYAKALEWYEKA--AEQGDADAQYNLGLLYlngeGVPKDPAKAAEWYRKAAEQG--DADAQYNL 177
|
....*.
gi 568856313 409 GVLYRD 414
Cdd:COG0790 178 GVLYEN 183
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
287-408 |
6.83e-09 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 56.22 E-value: 6.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 287 AYYKKAL--YYNWHYADAMYNlgvaYGEMLK-----FDMAIVFYelafhfnphcaeacnNLGVIYKDRDNLDKAVECYQM 359
Cdd:PRK02603 37 VYYRDGMsaQADGEYAEALEN----YEEALKleedpNDRSYILY---------------NMGIIYASNGEHDKALEYYHQ 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568856313 360 ALSIKPNFSQSLNNLGVVYTVQGKM--------------DAAAEMIEKAIAANP-TYAEAYNNL 408
Cdd:PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKaeeagdqdeaealfDKAAEYWKQAIRLAPnNYIEAQNWL 161
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
370-434 |
9.11e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 52.77 E-value: 9.11e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568856313 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
170-262 |
1.88e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.07 E-value: 1.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 170 AGNTQDGIQKYYEALKIDPH--YAP-AYYNLGVVYSELMQYDTALGCYEKAALERP---MYAEAYCNMGVIYKNRGDLES 243
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNspLAPdALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYDK 85
|
90
....*....|....*....
gi 568856313 244 AIACYERCLAVSPNFEIAK 262
Cdd:COG1729 86 ARATLEELIKKYPDSEAAK 104
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
53-394 |
8.28e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.15 E-value: 8.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 53 SYANILRSRNKFvdalALYEivlekDSGNVEAHIGKGIC-LQMQNMGRLAFDSFSEAV----------KLDPQNACAHTH 121
Cdd:TIGR00990 266 NYLQSFRPKPRP----AGLE-----DSNELDEETGNGQLqLGLKSPESKADESYEEAArafekaldlgKLGEKEAIALNL 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSlklagntqDGIQKYYE-ALKIDPHYAPAYYNLGVV 200
Cdd:TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP--------DKAEEDFDkALKLNSEDPDIYYHRAQL 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDlgtKVKleg 280
Cdd:TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD---QNK--- 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 281 dinqgvayYKKALYynwhyadamynlgvaygemlKFDMAIvfyELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECY 357
Cdd:TIGR00990 483 --------FDEAIE--------------------KFDTAI---ELEKETKPMYmnvLPLINKALALFQWKQDFIEAENLC 531
|
330 340 350
....*....|....*....|....*....|....*..
gi 568856313 358 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394
Cdd:TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
334-367 |
1.48e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 48.19 E-value: 1.48e-07
10 20 30
....*....|....*....|....*....|....
gi 568856313 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
225-258 |
1.60e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 48.19 E-value: 1.60e-07
10 20 30
....*....|....*....|....*....|....
gi 568856313 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
52-121 |
1.61e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.00 E-value: 1.61e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
339-408 |
4.25e-07 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 50.78 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--------------MDAAAEMIEKAIAANPT-YAE 403
Cdd:CHL00033 77 NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEqaieqgdseiaeawFDQAAEYWKQAIALAPGnYIE 156
|
....*
gi 568856313 404 AYNNL 408
Cdd:CHL00033 157 AQNWL 161
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
225-258 |
5.40e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 46.67 E-value: 5.40e-07
10 20 30
....*....|....*....|....*....|....
gi 568856313 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
2-292 |
5.60e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 53.45 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 2 AWMEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVG--STLKGFEGKDALSYANILRS-----RNKFVDALALYEIV 74
Cdd:TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAfeKALDLGKLGEKEAIALNLRGtfkclKGKHLEALADLSKS 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
Cdd:TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 155 CLAIvltdlgTSLKLaGNTQDGIQKYYEALKIDPHyAPAYYNLgvvYSELM----QYDTALGCYEKA-ALER---PMYae 226
Cdd:TIGR00990 438 QLGV------TQYKE-GSIASSMATFRRCKKNFPE-APDVYNY---YGELLldqnKFDEAIEKFDTAiELEKetkPMY-- 504
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568856313 227 aycnMGV---------IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAialtdlgtKVKL-EGDINQGVAYYKKA 292
Cdd:TIGR00990 505 ----MNVlplinkalaLFQWKQDFIEAENLCEKALIIDPECDIAVATMA--------QLLLqQGDVDEALKLFERA 568
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
334-367 |
6.70e-07 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 46.29 E-value: 6.70e-07
10 20 30
....*....|....*....|....*....|....
gi 568856313 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
344-442 |
8.22e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 8.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 344 YKDRDNlDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNLGVLYRDAGS 417
Cdd:COG1729 4 LKAGDY-DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGD 82
|
90 100
....*....|....*....|....*
gi 568856313 418 ISLAIDAYEQCLKIDPDSRNAGQNR 442
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAAKEAR 107
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
402-434 |
1.99e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 45.10 E-value: 1.99e-06
10 20 30
....*....|....*....|....*....|...
gi 568856313 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PRK12370 |
PRK12370 |
HilA/EilA family virulence transcriptional regulator; |
331-476 |
3.28e-06 |
|
HilA/EilA family virulence transcriptional regulator;
Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 51.01 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 331 PHCAEACNNLGV----IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406
Cdd:PRK12370 297 PYCALAECYLSMaqmgIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKY 376
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLaMNYINEGHDDKLFEAhrdwgkrfMRLYSQYT 476
Cdd:PRK12370 377 YYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-ITYYHTGIDDAIRLG--------DELRSQHL 437
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
338-397 |
3.70e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.46 E-value: 3.70e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568856313 338 NNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
402-434 |
6.45e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.59 E-value: 6.45e-06
10 20 30
....*....|....*....|....*....|...
gi 568856313 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
381-435 |
6.59e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 44.63 E-value: 6.59e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 568856313 381 QGKMDAAAEMIEKAIAANPT---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
Cdd:pfam13432 10 AGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
225-257 |
7.02e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 43.54 E-value: 7.02e-06
10 20 30
....*....|....*....|....*....|...
gi 568856313 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
164-245 |
9.93e-06 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 46.92 E-value: 9.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 164 GTSLKLAGNTQDGIQKYYEALK--IDPhYAPAY--YNLGVVYSELMQYDTALGcYEKAALER-PMYAEAYCNMGVIYKNR 238
Cdd:CHL00033 42 GMSAQSEGEYAEALQNYYEAMRleIDP-YDRSYilYNIGLIHTSNGEHTKALE-YYFQALERnPFLPQALNNMAVICHYR 119
|
....*..
gi 568856313 239 GdlESAI 245
Cdd:CHL00033 120 G--EQAI 124
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
381-456 |
1.76e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 381 QGKMDAAAEMIEKAIAANPT---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL-LAMNYINEGHDDK 456
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLkLGLSYLELGDYDK 85
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
225-257 |
2.78e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 41.74 E-value: 2.78e-05
10 20 30
....*....|....*....|....*....|...
gi 568856313 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
352-443 |
3.27e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.43 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 352 KAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS--------- 419
Cdd:PRK02603 53 EALENYEEALKLEEDpndRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAeeagdqdea 132
|
90 100
....*....|....*....|....*....
gi 568856313 420 -----LAIDAYEQCLKIDPDSRNAGQNRL 443
Cdd:PRK02603 133 ealfdKAAEYWKQAIRLAPNNYIEAQNWL 161
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
402-434 |
4.23e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 41.23 E-value: 4.23e-05
10 20 30
....*....|....*....|....*....|...
gi 568856313 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
343-409 |
6.92e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 45.70 E-value: 6.92e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568856313 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-YAEAYNNLG 409
Cdd:cd24142 9 ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG 76
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
225-293 |
6.93e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 6.93e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 225 AEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIaRRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
180-211 |
8.13e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 40.60 E-value: 8.13e-05
10 20 30
....*....|....*....|....*....|..
gi 568856313 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
Cdd:pfam13431 2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
334-366 |
8.17e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.58 E-value: 8.17e-05
10 20 30
....*....|....*....|....*....|...
gi 568856313 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
191-217 |
8.76e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.48 E-value: 8.76e-05
10 20
....*....|....*....|....*..
gi 568856313 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKA 27
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
156-217 |
1.25e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.22 E-value: 1.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERA 71
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
360-479 |
1.56e-04 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 44.88 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDaGSISLAIDAYEQCLKIDPDSrna 438
Cdd:PRK11189 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIaLYYG-GRYELAQDDLLAFYQDDPND--- 165
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568856313 439 gQNRLLAMnYINEGHDDKLfEAHRDWGKRFMRLYSQYTSWD 479
Cdd:PRK11189 166 -PYRALWL-YLAESKLDPK-QAKENLKQRYEKLDKEQWGWN 203
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
402-434 |
1.56e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.81 E-value: 1.56e-04
10 20 30
....*....|....*....|....*....|...
gi 568856313 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
341-382 |
2.32e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 2.32e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 568856313 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
381-481 |
2.67e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 45.07 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ-NRLLAMN-Y---INEGhdD 455
Cdd:PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKwESLLKVNrYwllIQQG--D 359
|
90 100
....*....|....*....|....*.
gi 568856313 456 KLFEAHRDWGKRfmRLYSQYTSWDNT 481
Cdd:PRK11447 360 AALKANNLAQAE--RLYQQARQVDNT 383
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
375-412 |
2.76e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.99 E-value: 2.76e-04
10 20 30
....*....|....*....|....*....|....*...
gi 568856313 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAY 38
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
171-204 |
4.39e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 4.39e-04
10 20 30
....*....|....*....|....*....|....
gi 568856313 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
Cdd:pfam13414 8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
134-254 |
5.08e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 44.08 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 134 EAAESYHKALSADPSYKPAAECLAIvLTDLGTSLKLAGNTQDGIQKYYEALKID-------------PHYAPAYYNLGVV 200
Cdd:COG3899 723 EALRYLERALELLPPDPEEEYRLAL-LLELAEALYLAGRFEEAEALLERALAARalaalaalrhgnpPASARAYANLGLL 801
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 201 YseLMQYDTALGCYEKAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254
Cdd:COG3899 802 L--LGDYEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEA 859
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
52-116 |
5.65e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 5.65e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568856313 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116
Cdd:COG4235 55 LDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
191-300 |
5.92e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.53 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPMYAEAYC--NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
Cdd:CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMrLEIDPYDRSYIlyNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114
|
90 100 110
....*....|....*....|....*....|...
gi 568856313 268 ALTDLGTKVKLEGDINQGVAYYKKALYYnWHYA 300
Cdd:CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEY-WKQA 146
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
300-366 |
5.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.29 E-value: 5.93e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568856313 300 ADAMYNLGVAYGEMLKFDMAIVFYELAF--------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
227-254 |
8.80e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.52 E-value: 8.80e-04
10 20
....*....|....*....|....*...
gi 568856313 227 AYCNMGVIYKNRGDLESAIACYERCLAV 254
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28
|
|
| EST1_DNA_bind |
pfam10373 |
Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the ... |
210-271 |
9.42e-04 |
|
Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the site of polymerization. This is the DNA/RNA binding domain of EST1.
Pssm-ID: 431239 Cd Length: 279 Bit Score: 42.01 E-value: 9.42e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568856313 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Cdd:pfam10373 1 ALRYYLLAILLLPSNGEPYNQLGVIALYVGNHLDAVYYFLRSLLSRNPFPTAKNNLELLFDK 62
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
300-333 |
1.00e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 1.00e-03
10 20 30
....*....|....*....|....*....|....
gi 568856313 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
52-146 |
1.04e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAcAHTHCGILYKDEGR 131
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALADLLERKEG 260
|
90
....*....|....*
gi 568856313 132 LVEAAESYHKALSAD 146
Cdd:COG2956 261 LEAALALLERQLRRH 275
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
191-217 |
1.45e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 1.45e-03
10 20
....*....|....*....|....*..
gi 568856313 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKA 27
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
279-366 |
1.45e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 279 EGDINQGVAYYKKAL--YYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDK 352
Cdd:COG1729 6 AGDYDEAIAAFKAFLkrYPNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYDK 85
|
90
....*....|....
gi 568856313 353 AVECYQMALSIKPN 366
Cdd:COG1729 86 ARATLEELIKKYPD 99
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
381-438 |
1.74e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 1.74e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 568856313 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRY 58
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
334-366 |
1.82e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 36.61 E-value: 1.82e-03
10 20 30
....*....|....*....|....*....|...
gi 568856313 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
392-416 |
2.08e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.37 E-value: 2.08e-03
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
368-401 |
2.48e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 2.48e-03
10 20 30
....*....|....*....|....*....|....
gi 568856313 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
300-333 |
3.34e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 3.34e-03
10 20 30
....*....|....*....|....*....|....
gi 568856313 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 333
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
198-239 |
3.34e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.30 E-value: 3.34e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 568856313 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
183-257 |
4.06e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.28 E-value: 4.06e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568856313 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPmYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Cdd:COG3071 250 WLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
339-402 |
4.31e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.55 E-value: 4.31e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568856313 339 NLGVIYKDRDNLDKAVECYQMAL---SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
116-186 |
4.71e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.98 E-value: 4.71e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568856313 116 ACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEiARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
381-434 |
5.34e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 5.34e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568856313 381 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434
Cdd:cd24142 13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
203-257 |
5.44e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 5.44e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 568856313 203 ELMQYDTALGCYEKAaLER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Cdd:cd24142 12 DQGNFELALKFLQRA-LELePNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
334-404 |
5.78e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 5.78e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568856313 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404
Cdd:COG1729 30 PDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
301-445 |
6.77e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.53 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLnNLGvvy 378
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggYEKYL-YLG--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568856313 379 tvQ--GKMDA------AAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAI------------DAYEQC-------LK 430
Cdd:cd24142 77 --QlsGGEEAlqyyekGIEILEEELQALQaASAEAEEEAEELKRKLSSALCALaeiymtdlcdepDAEQRCeelitkaLE 154
|
170
....*....|....*
gi 568856313 431 IDPDSRNAGQnrLLA 445
Cdd:cd24142 155 LDPTNPEALQ--TLA 167
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
232-273 |
8.35e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.14 E-value: 8.35e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 568856313 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
170-228 |
8.42e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 8.42e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 568856313 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
336-364 |
8.81e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 34.82 E-value: 8.81e-03
10 20
....*....|....*....|....*....
gi 568856313 336 ACNNLGVIYKDRDNLDKAVECYQMALSIK 364
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29
|
|
| |
