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LAMA1 laminin subunit alpha 1 [ Myotis lucifugus (little brown bat) ]

Gene ID: 102436659, updated on 30-Mar-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
See related
Ensembl:ENSMLUG00000004002
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
64
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871106.1 (3041418..3193408, complement)

NW_005871106.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 28 Neighboring gene sodium/hydrogen exchanger 9B1 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene leucine rich repeat containing 30 Neighboring gene G1/S-specific cyclin-E2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871106 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871106.1 Reference Myoluc2.0

    Range
    3041418..3193408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023754272.1 → XP_023610040.1  LOW QUALITY PROTEIN: laminin subunit alpha-1

    UniProtKB/TrEMBL
    G1P1G9
    Related
    ENSMLUP00000003659.2, ENSMLUT00000004018.2
    Conserved Domains (10) summary
    smart00136
    Location:76 → 326
    LamNT; Laminin N-terminal domain (domain VI)
    smart00281
    Location:1271 → 1402
    LamB; Laminin B domain
    cd00055
    Location:959 → 1006
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2366 → 2522
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1009 → 1056
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2798 → 2927
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:2071 → 2204
    Laminin_II; Laminin Domain II
    pfam00052
    Location:626 → 765
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1634 → 1877
    Laminin_I; Laminin Domain I
    cl25732
    Location:1708 → 2073
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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