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LAMA1 laminin subunit alpha 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102380091, updated on 10-Mar-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
62
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842074.1 (734926..862357, complement)

NW_005842074.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 28 Neighboring gene uncharacterized LOC102377490 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC112550292 Neighboring gene leucine rich repeat containing 30

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005842074 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005842074.1 Reference ASM45574v1 Primary Assembly

    Range
    734926..862357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025204249.1 → XP_025060034.1  laminin subunit alpha-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0GJZ7
    Conserved Domains (9) summary
    smart00282
    Location:2099 → 2238
    LamG; Laminin G domain
    cd00055
    Location:694 → 742
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2265 → 2421
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:855 → 906
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2712 → 2840
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:1969 → 2103
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1171 → 1313
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1530 → 1780
    Laminin_I; Laminin Domain I
    cl02806
    Location:1 → 221
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_025204250.1 → XP_025060035.1  laminin subunit alpha-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0GPD3
    Conserved Domains (9) summary
    smart00282
    Location:2099 → 2238
    LamG; Laminin G domain
    cd00055
    Location:694 → 742
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2265 → 2421
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:855 → 906
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2712 → 2840
    Laminin_G_1; Laminin G domain
    pfam06009
    Location:1969 → 2103
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1171 → 1313
    Laminin_B; Laminin B (Domain IV)
    pfam06008
    Location:1530 → 1780
    Laminin_I; Laminin Domain I
    cl02806
    Location:1 → 221
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
Heading Accession and Version

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