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ifih1 interferon induced with helicase C domain 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237624, updated on 10-Mar-2024

Summary

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Gene symbol
ifih1
Gene description
interferon induced with helicase C domain 1
See related
Ensembl:ENSXMAG00000011536
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See ifih1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 7 NC_036449.1 (17864446..17881817)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372315.1 (873243..889016, complement)

Chromosome 7 - NC_036449.1Genomic Context describing neighboring genes Neighboring gene fidgetin Neighboring gene potassium voltage-gated channel subfamily H member 7 Neighboring gene fibroblast activation protein, alpha Neighboring gene glucagon b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced helicase C domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036449.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    17864446..17881817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014471128.2 → XP_014326614.1  interferon-induced helicase C domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    M4AAT9
    Related
    ENSXMAP00000011583.1, ENSXMAT00000011597.2
    Conserved Domains (6) summary
    COG1111
    Location:269 → 830
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd00046
    Location:289 → 456
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cl17041
    Location:506 → 630
    helicase_insert_domain; helicase_insert_domain
    pfam00271
    Location:638 → 760
    Helicase_C; Helicase conserved C-terminal domain
    cl13152
    Location:836 → 951
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    cl14633
    Location:105 → 196
    DD; Death Domain Superfamily of protein-protein interaction domains

  2. XM_023336885.1 → XP_023192653.1  interferon-induced helicase C domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B5QTD5
    Related
    ENSXMAP00000034483.1, ENSXMAT00000037110.1
    Conserved Domains (3) summary
    cl13152
    Location:819 → 934
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    cl14633
    Location:105 → 196
    DD; Death Domain Superfamily of protein-protein interaction domains
    cl17041
    Location:252 → 813
    helicase_insert_domain
Nucleotide Protein Strain
Heading Accession and Version

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