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rad54l2 RAD54 like 2 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102236516, updated on 10-Mar-2024

Summary

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Gene symbol
rad54l2
Gene description
RAD54 like 2
See related
Ensembl:ENSXMAG00000017182
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See rad54l2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
22
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 20 NC_036462.1 (17713126..17730035, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372364.1 (818029..828685)

Chromosome 20 - NC_036462.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 1 Neighboring gene cytochrome b561 family, member D2 Neighboring gene BRCA1 associated deubiquitinase 1 Neighboring gene bassoon (presynaptic cytomatrix protein) b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase ARIP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036462.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    17713126..17730035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023325050.1 → XP_023180818.1  helicase ARIP4 isoform X2

    UniProtKB/TrEMBL
    M4ARY6
    Related
    ENSXMAP00000021881.1, ENSXMAT00000042398.1
    Conserved Domains (1) summary
    COG0553
    Location:169 → 937
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

  2. XM_014471844.2 → XP_014327330.1  helicase ARIP4 isoform X1

    UniProtKB/TrEMBL
    M4ARY6
    Related
    ENSXMAP00000017231.2, ENSXMAT00000017255.2
    Conserved Domains (3) summary
    cd00046
    Location:339 → 531
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:313 → 667
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:750 → 884
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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