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LOC102225789 helicase ARIP4-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102225789, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102225789
Gene description
helicase ARIP4-like
See related
Ensembl:ENSXMAG00000019370
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102225789 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 1 NC_036443.1 (8745465..8809156)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372223.1 (1754378..1783548, complement)

Chromosome 1 - NC_036443.1Genomic Context describing neighboring genes Neighboring gene bassoon presynaptic cytomatrix protein a Neighboring gene uncharacterized LOC111609465 Neighboring gene transmembrane protein 115 Neighboring gene ras homolog gene family, member Ab

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase ARIP4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036443.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    8745465..8809156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023332504.1 → XP_023188272.1  helicase ARIP4-like isoform X1

    UniProtKB/TrEMBL
    A0A3B5QNT3
    Conserved Domains (2) summary
    COG0553
    Location:262 → 928
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cl25864
    Location:22 → 115
    SPATA3; Spermatogenesis-associated protein 3 family

  2. XM_023332511.1 → XP_023188279.1  helicase ARIP4-like isoform X2

    UniProtKB/TrEMBL
    A0A3B5QNT3, A0A3B5R136
    Related
    ENSXMAP00000037338.1, ENSXMAT00000039158.1
    Conserved Domains (2) summary
    COG0553
    Location:248 → 914
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cl25864
    Location:22 → 115
    SPATA3; Spermatogenesis-associated protein 3 family

  3. XM_023332518.1 → XP_023188286.1  helicase ARIP4-like isoform X4

    UniProtKB/TrEMBL
    A0A3B5QNT3
    Conserved Domains (2) summary
    COG0553
    Location:235 → 901
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cl25864
    Location:22 → 115
    SPATA3; Spermatogenesis-associated protein 3 family

  4. XM_023332526.1 → XP_023188294.1  helicase ARIP4-like isoform X5

    UniProtKB/TrEMBL
    A0A3B5QNT3
    Related
    ENSXMAP00000019421.2, ENSXMAT00000019449.2
    Conserved Domains (1) summary
    COG0553
    Location:227 → 893
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

  5. XM_014469168.2 → XP_014324654.1  helicase ARIP4-like isoform X3

    UniProtKB/TrEMBL
    A0A3B5QNT3
    Related
    ENSXMAP00000033094.1, ENSXMAT00000023656.1
    Conserved Domains (3) summary
    cd00046
    Location:304 → 496
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:278 → 632
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:714 → 850
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein Strain
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