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dhx33 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222687, updated on 10-Mar-2024

Summary

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Gene symbol
dhx33
Gene description
DEAH (Asp-Glu-Ala-His) box polypeptide 33
See related
Ensembl:ENSXMAG00000005679
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See dhx33 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 11 NC_036453.1 (25781480..25790725, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372232.1 (1983614..1991699, complement)

Chromosome 11 - NC_036453.1Genomic Context describing neighboring genes Neighboring gene carbohydrate-responsive element-binding protein Neighboring gene complement component 1, q subcomponent binding protein Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 1 Neighboring gene uncharacterized LOC111610110 Neighboring gene calcium/calmodulin-dependent protein kinase kinase 1, alpha a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative ATP-dependent RNA helicase DHX33
Names
DEAH-box helicase 33

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036453.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    25781480..25790725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005800788.2 → XP_005800845.1  putative ATP-dependent RNA helicase DHX33

    UniProtKB/TrEMBL
    M3ZU18
    Related
    ENSXMAP00000005711.1, ENSXMAT00000005717.2
    Conserved Domains (5) summary
    smart00487
    Location:51 → 235
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:452 → 537
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:65 → 208
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:265 → 382
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:571 → 671
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein Strain
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