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LOC102222158 transcription activator BRG1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222158, updated on 10-Mar-2024

Summary

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Gene symbol
LOC102222158
Gene description
transcription activator BRG1
See related
Ensembl:ENSXMAG00000007030
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See LOC102222158 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
34
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 5 NC_036447.1 (10216456..10234455)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372196.1 (3245488..3262542)

Chromosome 5 - NC_036447.1Genomic Context describing neighboring genes Neighboring gene microtubule associated serine/threonine kinase 1a Neighboring gene autophagy related 4D, cysteine peptidase a Neighboring gene low density lipoprotein receptor b Neighboring gene adaptor related protein complex 1 subunit mu 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription activator BRG1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036447.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    10216456..10234455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005797517.3 → XP_005797574.1  transcription activator BRG1 isoform X1

    UniProtKB/TrEMBL
    M3ZY21
    Conserved Domains (8) summary
    cd05516
    Location:1477 → 1583
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:658 → 700
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:505 → 577
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:815 → 954
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:798 → 1093
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1120 → 1235
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:218 → 251
    QLQ; QLQ
    pfam14619
    Location:1338 → 1405
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  2. XM_005797518.3 → XP_005797575.1  transcription activator BRG1 isoform X2

    UniProtKB/TrEMBL
    A0A3B5R1K6, M3ZY21
    Related
    ENSXMAP00000036301.1, ENSXMAT00000041211.1
    Conserved Domains (8) summary
    cd05516
    Location:1469 → 1575
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:658 → 700
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:505 → 577
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:815 → 954
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:798 → 1093
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1120 → 1235
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:218 → 251
    QLQ; QLQ
    pfam14619
    Location:1330 → 1397
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
Nucleotide Protein Strain
Heading Accession and Version

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