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ago3b argonaute RISC catalytic component 3b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102221349, updated on 10-Mar-2024

Summary

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Gene symbol
ago3b
Gene description
argonaute RISC catalytic component 3b
See related
Ensembl:ENSXMAG00000027615
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See ago3b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
20
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 13 NC_036455.1 (14149005..14166066)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372578.1 (359266..375225, complement)

Chromosome 13 - NC_036455.1Genomic Context describing neighboring genes Neighboring gene sodium/hydrogen exchanger 3-like Neighboring gene oleoyl-ACP hydrolase Neighboring gene free fatty acid receptor 3-like Neighboring gene free fatty acid receptor 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein argonaute-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036455.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    14149005..14166066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014473610.2 → XP_014329096.2  protein argonaute-3-like isoform X1

    Conserved Domains (4) summary
    cd02846
    Location:225 → 345
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:390 → 822
    Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
    pfam08699
    Location:176 → 224
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:70 → 164
    ArgoN; N-terminal domain of argonaute

  2. XM_023344946.1 → XP_023200714.1  protein argonaute-3-like isoform X2

    UniProtKB/TrEMBL
    A0A3B5RAT3
    Related
    ENSXMAP00000040883.1, ENSXMAT00000023751.1
    Conserved Domains (4) summary
    cd02846
    Location:225 → 345
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:390 → 815
    Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
    pfam08699
    Location:176 → 224
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:70 → 164
    ArgoN; N-terminal domain of argonaute

  3. XM_023344945.1 → XP_023200713.1  protein argonaute-3-like isoform X1

    Conserved Domains (4) summary
    cd02846
    Location:225 → 345
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:390 → 822
    Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
    pfam08699
    Location:176 → 224
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:70 → 164
    ArgoN; N-terminal domain of argonaute
Nucleotide Protein Strain
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