1T2S,1SI2,1SI3,1R4K,1VYN


Conserved Protein Domain Family
PAZ_argonaute_like

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cd02846: PAZ_argonaute_like 
Click on image for an interactive view with Cn3D
PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Statistics
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PSSM-Id: 239212
Aligned: 78 rows
Threshold Bit Score: 47.697
Created: 28-Jul-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
nucleic
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleic acid-binding interface [nucleic acid binding site]
Evidence:
  • Structure:1T2S: Drosophila Argonaute2 PAZ domain binds to 3' end of ssDNA, contacts at 3.5A
    View structure with Cn3D
  • Structure:1SI2: PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex of deoxynucleotide overhang
    View structure with Cn3D
  • Structure:1SI3: PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                      #              
1T2S_A      4 AMPMIEYLERFSLkakinnttnldySRRFLEPFLR--------GINVVYTPpqsf----qsaPRVYRVN--GLSRApas- 68   fruit fly
14573843  297 YAPLVELLQTFRGfsttl--kanspAAQRIEKAFV--------GLDVVLNYgvhkg--lgedGVVMKIR--RFHTSak-- 360  Caenorhabditis el...
NP_500921  44 FQPLSELIMSYNLyyhgi--kcnsrDGKKLSQAFK--------GLNISVNYgknkn--lqedAVMFKIK--GFSHSsr-- 107  nematode
2315370   273 NCSLLKVFMDYRGf----------nGSLKANSPFVlknknafiGLWCYTTHgkcsd--wkddRPMIKIKdfGLSAKe--- 337  Caenorhabditis el...
CAE68598  271 NIPLPELISQYLGglderl-satskDGLYVTRALK--------GCEFYLNYsrsetvsdfedNLVVKLH--GFSNSat-- 337  Caenorhabditis br...
CAE66744  271 NVSLVDVLKSYRGfaanl--ayntpVAQRIEKAFV--------GLDVSLNYgpyag--lgedGLVSKIR--KFSTSsv-- 334  Caenorhabditis br...
CAE62330  264 NEPLINVMKTLKGfspnl--glssqEGINAAKALK--------GLEFFCNYgdlkd--kgneRRIVKALdfGGSARs--- 328  Caenorhabditis br...
CAE71861  269 HAPLLNVFREIRGfatn-----ltaTSGWAREHIQny-----kGLCCYLDYgsseg--lendRKMVKIHsfGETARn--- 333  Caenorhabditis br...
AAN32951  337 DQMITSVLKPLVSqg--------ryEQSEAMRALRrl-----kGCRFTLLHrp-------neTKEYKIK--GFAFDkkhg 394  Neurospora crassa
CAE61599  283 HMTLADYFRTFQGfhyhl--drndvVARNMLKALKn------fRLRKACTRw---------eRRENDSNp-RIRKEadg- 343  Caenorhabditis br...
Feature 1               #             #   #                     #       # #        
1T2S_A     69 -------seTFEHDgk-----kVTIASYFHSR-NYPLKFPQ----LHCLNVGss-ikSILLPIELCSIE 119  fruit fly
14573843  361 -------etCFEVEkst--refTNVFDYFKKKyGITLKYPD----LFTIEAKgk-qgKIHFPAEVLLLC 415  Caenorhabditis elegans
NP_500921 108 -------eqRFVNEgv-----eITVESYFRRKfGIHLRYPE----LMTVVAEgr-tsLLYFPPELMLCS 159  nematode
2315370   338 --------tTFERDnk-----kISVFNYFQVKyNMTLKYPD----LFTVVARgkdgkNQHIPVECLDLC 389  Caenorhabditis elegans
CAE68598  338 --------nSFFERee----ssISVADHFREKyNIQLKYPS----LMTALAKpkggrLMVLPVELLVLC 390  Caenorhabditis briggsae
CAE66744  335 -------qtTFKWNdc-----eVNLVTYYKEKyGITLKFPH----LFTVEAKgk-vgRINFPVELLVLC 386  Caenorhabditis briggsae
CAE62330  329 --------tTFLVDne-----pTSVEAYFQNKyKERLAFPN----LMTVIVKgrngsRVNIPAELLDFC 380  Caenorhabditis briggsae
CAE71861  334 --------qKFEKSdg----kvSSVFDYFKGRyEKILKFPD----LFTVVVMga-rgGRLIPVELLTFC 385  Caenorhabditis briggsae
AAN32951  395 pngansynvKFNWKqqngtekeICIKDYMKER-YGYLVRQAg---WPVIETTr----AGSFPAEVCNIV 455  Neurospora crassa
CAE61599  344 ------pgiQLPDGt------lTNVYEYFRNRyNVELELTElwtiESTVQSGg----VGYYPPELLRVI 396  Caenorhabditis briggsae

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