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hbs1l HBS1-like translational GTPase [ Pundamilia nyererei ]

Gene ID: 102210462, updated on 10-Mar-2024

Summary

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Gene symbol
hbs1l
Gene description
HBS1-like translational GTPase
See related
Ensembl:ENSPNYG00000013360
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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See hbs1l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187562.1 (306002..330717, complement)

NW_005187562.1Genomic Context describing neighboring genes Neighboring gene serum/glucocorticoid regulated kinase 1 Neighboring gene aldehyde dehydrogenase 8 family, member A1 Neighboring gene v-myb avian myeloblastosis viral oncogene homolog Neighboring gene phosphodiesterase 7B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187562.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HBS1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187562.1 Reference PunNye1.0

    Range
    306002..330717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005745569.1 → XP_005745626.1  HBS1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A3B4G470
    Related
    ENSPNYP00000017670.1, ENSPNYT00000018107.1
    Conserved Domains (5) summary
    cd01883
    Location:266 → 485
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    COG5256
    Location:260 → 688
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    pfam08938
    Location:73 → 128
    HBS1_N; HBS1 N-terminus
    cd16267
    Location:491 → 573
    HBS1-like_II; Domain II of Hbs1-like proteins
    cd04093
    Location:578 → 686
    HBS1_C_III; C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1)

  2. XM_005745571.1 → XP_005745628.1  HBS1-like protein isoform X3

    See identical proteins and their annotated locations for XP_005745628.1

    UniProtKB/TrEMBL
    A0A9Y3VNY5
    Conserved Domains (5) summary
    cd01883
    Location:246 → 465
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    COG5256
    Location:240 → 668
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    pfam08938
    Location:53 → 108
    HBS1_N; HBS1 N-terminus
    cd16267
    Location:471 → 553
    HBS1-like_II; Domain II of Hbs1-like proteins
    cd04093
    Location:558 → 666
    HBS1_C_III; C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1)

  3. XM_005745572.1 → XP_005745629.1  HBS1-like protein isoform X3

    See identical proteins and their annotated locations for XP_005745629.1

    UniProtKB/TrEMBL
    A0A9Y3VNY5
    Conserved Domains (5) summary
    cd01883
    Location:246 → 465
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    COG5256
    Location:240 → 668
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    pfam08938
    Location:53 → 108
    HBS1_N; HBS1 N-terminus
    cd16267
    Location:471 → 553
    HBS1-like_II; Domain II of Hbs1-like proteins
    cd04093
    Location:558 → 666
    HBS1_C_III; C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1)

  4. XM_005745570.1 → XP_005745627.1  HBS1-like protein isoform X2

    UniProtKB/TrEMBL
    A0A9Y3RQT8
    Conserved Domains (1) summary
    pfam08938
    Location:73 → 128
    HBS1_N; HBS1 N-terminus
Nucleotide Protein
Heading Accession and Version

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