3MCA


Conserved Protein Domain Family
HBS1_N

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pfam08938: HBS1_N (this model, PSSM-Id:286079 is obsolete and has been replaced by 462642)
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HBS1 N-terminus
This domain is found at the N-terminus of HBS1 proteins. It interacts with the ribosomal protein rpS3 at the mRNA entry site.
Statistics
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PSSM-Id: 286079
Aligned: 102 rows
Threshold Bit Score: 52.5717
Created: 13-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3MCA_A        13 DDYEl--D-EEPGEEe---------------LTEEQEEEFRSAVATVRETLLgv---pISEKEIADTVWYYYFDVEKSVN 71  fission yeast
Q759Q2         8 DDMDt--Q-EDPLEFqdeae-------lddyLNDEEYDLMNELFPRAKAELSehq--gwDNLAVKQAIWDAEFDLEAALV 75  Eremothecium go...
XP_003687403   8 DEIDy--E-NETPDFhdeqd-------lddyLNDEEYDLMNDLLPLVRNGMEdf--dgWNNFDLKLALFDSDFNTEEALS 75  Tetrapisispora ...
XP_003958577   6 dydddymddNEIPEFqdead-------fddyLNDEEYDLMSQVLPAAKNKLKeeeyvgWNNFDVKLAIFDNDFDLDAALS 78  Kazachstania af...
AJS54174       4 sDYSd--GaDDMPDFhdege-------fddyLNDDEYELMNEVFPTLKAQLQdy--qgWDNLSLKLALFDNNFDLESTLA 72  Saccharomyces c...
XP_002494876   1 mvAYe--D-DDLMDYeeelpefeneadldeyLNDDEYELMNQLFPHVKKEMVdy--qgWDNFALKKTIFETNFDPDESLK 75  Zygosaccharomyc...
XP_002554963   8 DDMDtdlQ-DEVPEFrdeae-------fddyLNDEEYQLMSEMFPRAKKELAdyv--gwDNLSVKVTIFDHEFNFDEAMI 77  Lachancea therm...
XP_004178231   9 DDLEd-fH-DDIPDFqdeqe-------fddyLNDEEYDLMSQQFPQAKKALQdyq--gwNNLAVKLAIFDSDFDLDQALI 77  Tetrapisispora ...
XP_003673285   7 DDYEd--D-EGPYEFhdeae-------fddyLNDEEYDLLNQVLPHLKTQMKeyq--gwNNLDLKLALFDNEFESDVAFN 74  Naumovozyma cas...
XP_003667723   7 DDYDd--D-NGPMDFqdeae-------fddyLNDEEYDLINDVLPTVKKEMAdyq--gwNNLNLKLALFDHEFDTQAALS 74  Naumovozyma dai...
3MCA_A        72 YLLQKASSK 80  fission yeast
Q759Q2        76 QLKRRYKKK 84  Eremothecium gossypii
XP_003687403  76 LLMKDFKKK 84  Tetrapisispora phaffii CBS 4417
XP_003958577  79 HLRQSFkkk 87  Kazachstania africana CBS 2517
AJS54174      73 Elkktlkkk 81  Saccharomyces cerevisiae YJM1463
XP_002494876  76 ILKRSFKKK 84  Zygosaccharomyces rouxii CBS 732
XP_002554963  78 ELKRSLKKK 86  Lachancea thermotolerans CBS 6340
XP_004178231  78 NLKRTYKKK 86  Tetrapisispora blattae CBS 6284
XP_003673285  75 QLKKTFKKK 83  Naumovozyma castellii CBS 4309
XP_003667723  75 HLKKTFKKK 83  Naumovozyma dairenensis CBS 421
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