U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

IDH1 isocitrate dehydrogenase (NADP(+)) 1 [ Sus scrofa (pig) ]

Gene ID: 102166364, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
IDH1provided by VGNC
Official Full Name
isocitrate dehydrogenase (NADP(+)) 1provided by VGNC
Primary source
VGNC:VGNC:111751
See related
Ensembl:ENSSSCG00000023264
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
IDH; IDP
Expression
Broad expression in subcutaneous adipose (RPKM 72.3), liver (RPKM 67.5) and 7 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See IDH1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (111341153..111362330, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (122861672..122883887, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene gamma-crystallin A Neighboring gene chromosome 15 C2orf80 homolog Neighboring gene uncharacterized LOC110257036 Neighboring gene phosphoinositide kinase, FYVE-type zinc finger containing Neighboring gene parathyroid hormone 2 receptor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
isocitrate dehydrogenase [NADP] cytoplasmic
Names
Cytosolic NADP-isocitrate dehydrogenase
Isocitrate dehydrogenase [NADP] cytoplasmic
NADP(+)-specific ICDH
Oxalosuccinate decarboxylase
isocitrate dehydrogenase (NADP(+)) 1, cytosolic

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    111341153..111362330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074908.1 → XP_020930567.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A8D0HUL6, A0A8D1BE35
    Conserved Domains (1) summary
    PTZ00435
    Location:39 → 449
    PTZ00435; isocitrate dehydrogenase; Provisional

  2. XM_005672137.3 → XP_005672194.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X2

    See identical proteins and their annotated locations for XP_005672194.1

    UniProtKB/TrEMBL
    A0A4X1UYV3, A0A4X1UZU9, A0A8D0HUL6
    Related
    ENSSSCP00000040163.3, ENSSSCT00000059742.3
    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional

  3. XM_005672136.3 → XP_005672193.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X2

    See identical proteins and their annotated locations for XP_005672193.1

    UniProtKB/TrEMBL
    A0A4X1UYV3, A0A4X1UZU9, A0A8D0HUL6
    Related
    ENSSSCP00000050907.3, ENSSSCT00000043430.3
    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional

  4. XM_013984433.2 → XP_013839887.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A4X1UYV3, A0A4X1UZU9, A0A8D0HUL6
    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional

  5. XM_013984432.2 → XP_013839886.1  isocitrate dehydrogenase [NADP] cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A4X1UYV3, A0A4X1UZU9, A0A8D0HUL6
    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P20304.1 GenPept UniProtKB/Swiss-Prot:P20304

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.