U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Snrpc small nuclear ribonucleoprotein polypeptide C [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101970414, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Snrpc
Gene description
small nuclear ribonucleoprotein polypeptide C
Locus tag
H1C71_025604
See related
EnsemblRapid:ENSSTOG00015017219
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Snrpc in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404946.1 (39570835..39588900)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936476.1 (24371268..24389355, complement)

NW_024404946.1Genomic Context describing neighboring genes Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene protein mago nashi homolog Neighboring gene uncharacterized LOC120889013 Neighboring gene bridge-like lipid transfer protein family member 3A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U1 small nuclear ribonucleoprotein C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404946.1 Reference HiC_Itri_2 Primary Assembly

    Range
    39570835..39588900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040282500.1 → XP_040138434.1  U1 small nuclear ribonucleoprotein C isoform X1

    Conserved Domains (1) summary
    pfam06220
    Location:1 → 38
    zf-U1; U1 zinc finger

  2. XM_005318785.4 → XP_005318842.1  U1 small nuclear ribonucleoprotein C isoform X2

    See identical proteins and their annotated locations for XP_005318842.1

    UniProtKB/TrEMBL
    I3MLP3
    Related
    ENSSTOP00015021203.1, ENSSTOT00015023183.1
    Conserved Domains (1) summary
    pfam06220
    Location:1 → 38
    zf-U1; U1 zinc finger

  3. XM_021722009.2 → XP_021577684.1  U1 small nuclear ribonucleoprotein C isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.