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Wbp4 WW domain binding protein 4 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101970106, updated on 8-Mar-2024

Summary

Gene symbol
Wbp4
Gene description
WW domain binding protein 4
Locus tag
H1C71_014451
See related
EnsemblRapid:ENSSTOG00015001348
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
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Genomic context

See Wbp4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404945.1 (151450151..151472946)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936667.1 (426752..449562, complement)

NW_024404945.1Genomic Context describing neighboring genes Neighboring gene E74 like ETS transcription factor 1 Neighboring gene pleckstrin homology domain-containing family A member 1-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like Neighboring gene 60S ribosomal protein L36a-like

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
WW domain-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404945.1 Reference HiC_Itri_2 Primary Assembly

    Range
    151450151..151472946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005336783.4XP_005336840.1  WW domain-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    I3MZ44
    Related
    ENSSTOP00015001652.1, ENSSTOT00015001820.1
    Conserved Domains (2) summary
    COG5104
    Location:125193
    PRP40; Splicing factor [RNA processing and modification]
    pfam06220
    Location:844
    zf-U1; U1 zinc finger
  2. XM_040281453.1XP_040137387.1  WW domain-binding protein 4 isoform X2

    Conserved Domains (1) summary
    COG5104
    Location:58126
    PRP40; Splicing factor [RNA processing and modification]
  3. XM_040281454.1XP_040137388.1  WW domain-binding protein 4 isoform X2

    Conserved Domains (1) summary
    COG5104
    Location:58126
    PRP40; Splicing factor [RNA processing and modification]