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CGB_C3460W ATP-dependent RNA helicase cdc28, putative [ Cryptococcus gattii WM276 ]

Gene ID: 10187315, updated on 6-Jun-2024

Summary

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Gene symbol
CGB_C3460W
Gene description
ATP-dependent RNA helicase cdc28, putative
Locus tag
CGB_C3460W
See related
FungiDB:CGB_C3460W; VEuPathDB:CGB_C3460W
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cryptococcus gattii WM276 (strain: WM276, serotype: B)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex
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Genomic context

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See CGB_C3460W in Genome Data Viewer
Location:
chromosome: C
Exon count:
10
Sequence:
Chromosome: C; NC_014940.1 (732858..736678)

Chromosome C - NC_014940.1Genomic Context describing neighboring genes Neighboring gene ER-associated protein catabolism-related protein, putative Neighboring gene Nuclear matrix protein NMP200, putative Neighboring gene Hypothetical Protein Neighboring gene C-4 methyl sterol oxidase, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014940.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. D'Souza CA, et al. mBio, 2011. PMID 21304167, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase cdc28, putative
XP_003192739.1
  • Similar to TIGR gene model, INSD accession AAW42215.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014940.1 Reference assembly

    Range
    732858..736678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003192691.1 → XP_003192739.1  ATP-dependent RNA helicase cdc28, putative [Cryptococcus gattii WM276]

    See identical proteins and their annotated locations for XP_003192739.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E6R394
    Conserved Domains (5) summary
    smart00487
    Location:429 → 610
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:830 → 914
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:448 → 587
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:628 → 762
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:936 → 1050
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
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