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Lama1 laminin subunit alpha 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101824731, updated on 8-Mar-2024

Summary

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Gene symbol
Lama1
Gene description
laminin subunit alpha 1
See related
EnsemblRapid:ENSMAUG00000000452
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
63
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429194.1 (4736235..4862979, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801734.1 (1831877..1967849)

NW_024429194.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121142594 Neighboring gene Rho GTPase activating protein 28 Neighboring gene uncharacterized LOC121142701 Neighboring gene uncharacterized LOC121142595 Neighboring gene uncharacterized LOC121142703 Neighboring gene leucine rich repeat containing 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429194.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    4736235..4862979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040752891.1 → XP_040608825.1  laminin subunit alpha-1

    UniProtKB/TrEMBL
    A0A3Q0DA75
    Related
    ENSMAUP00000000565.2, ENSMAUT00000000596.2
    Conserved Domains (10) summary
    smart00136
    Location:25 → 275
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:958 → 1002
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:574 → 702
    LamB; Laminin B domain
    smart00282
    Location:2149 → 2288
    LamG; Laminin G domain
    COG0840
    Location:1731 → 2030
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:908 → 956
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2725 → 2876
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1582 → 1838
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2019 → 2153
    Laminin_II; Laminin Domain II
    cl02548
    Location:1220 → 1351
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
Heading Accession and Version

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