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PKD1 polycystin 1, transient receptor potential channel interacting [ Anas platyrhynchos (mallard) ]

Gene ID: 101804777, updated on 8-Mar-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
Locus tag
Anapl_18117
See related
EnsemblRapid:ENSAPLG00030000514
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
46
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 15 NC_051786.1 (16371680..16456375, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 15 NC_040060.1 (1487236..1572780)

Chromosome 15 - NC_051786.1Genomic Context describing neighboring genes Neighboring gene NHERF family PDZ scaffold protein 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene TSC complex subunit 2 Neighboring gene uncharacterized LOC113845232 Neighboring gene RAB26, member RAS oncogene family Neighboring gene uncharacterized LOC119718420 Neighboring gene small nucleolar RNA SNORD60

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051786.1 Reference ZJU1.0 Primary Assembly

    Range
    16371680..16456375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038186836.1 → XP_038042764.1  polycystin-1 isoform X3

    Conserved Domains (6) summary
    TIGR00864
    Location:117 → 2748
    PCC; polycystin cation channel protein
    cd01752
    Location:3129 → 3248
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    TIGR04264
    Location:2828 → 2944
    hyperosmo_Ebh; hyperosmolarity resistance protein Ebh, N-terminal domain
    sd00031
    Location:92 → 112
    LRR_1; leucine-rich repeat [structural motif]
    pfam08016
    Location:3734 → 4149
    PKD_channel; Polycystin cation channel
    cl02559
    Location:3022 → 3071
    GPS; GPCR proteolysis site, GPS, motif

  2. XM_038186835.1 → XP_038042763.1  polycystin-1 isoform X2

    Related
    ENSAPLP00030000894.1, ENSAPLT00030001338.1
    Conserved Domains (6) summary
    TIGR00864
    Location:117 → 2748
    PCC; polycystin cation channel protein
    cd01752
    Location:3129 → 3248
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    TIGR04264
    Location:2828 → 2944
    hyperosmo_Ebh; hyperosmolarity resistance protein Ebh, N-terminal domain
    sd00031
    Location:92 → 112
    LRR_1; leucine-rich repeat [structural motif]
    pfam08016
    Location:3734 → 4149
    PKD_channel; Polycystin cation channel
    cl02559
    Location:3022 → 3071
    GPS; GPCR proteolysis site, GPS, motif

  3. XM_038186834.1 → XP_038042762.1  polycystin-1 isoform X1

    Related
    ENSAPLP00030000892.1, ENSAPLT00030001336.1
    Conserved Domains (6) summary
    TIGR00864
    Location:117 → 2749
    PCC; polycystin cation channel protein
    cd01752
    Location:3130 → 3249
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    TIGR04264
    Location:2829 → 2945
    hyperosmo_Ebh; hyperosmolarity resistance protein Ebh, N-terminal domain
    sd00031
    Location:92 → 112
    LRR_1; leucine-rich repeat [structural motif]
    pfam08016
    Location:3735 → 4150
    PKD_channel; Polycystin cation channel
    cl02559
    Location:3023 → 3072
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
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