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CNOT9 CCR4-NOT transcription complex subunit 9 [ Anas platyrhynchos (mallard) ]

Gene ID: 101804561, updated on 8-Mar-2024

Summary

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Gene symbol
CNOT9
Gene description
CCR4-NOT transcription complex subunit 9
Locus tag
Anapl_14580
See related
EnsemblRapid:ENSAPLG00030005210
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See CNOT9 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 7 NC_051778.1 (7416639..7424360)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 7 NC_040052.1 (36296794..36305392, complement)

Chromosome 7 - NC_051778.1Genomic Context describing neighboring genes Neighboring gene villin 1 Neighboring gene ubiquitin specific peptidase 37 Neighboring gene phospholipase C delta 4 Neighboring gene zinc finger protein 142 Neighboring gene mitochondrial chaperone BCS1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 9
Names
Cell differentiation protein RCD1-like protein
cell differentiation protein RCD1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051778.1 Reference ZJU1.0 Primary Assembly

    Range
    7416639..7424360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038181959.1 → XP_038037887.1  CCR4-NOT transcription complex subunit 9 isoform X1

    UniProtKB/TrEMBL
    R0LIK7
    Conserved Domains (1) summary
    pfam04078
    Location:25 → 285
    Rcd1; Cell differentiation family, Rcd1-like

  2. XM_027461298.2 → XP_027317099.2  CCR4-NOT transcription complex subunit 9 isoform X2

    UniProtKB/TrEMBL
    A0A493SSQ2, R0LIK7
    Related
    ENSAPLP00030010632.1, ENSAPLT00030013851.1
    Conserved Domains (1) summary
    pfam04078
    Location:25 → 283
    Rcd1; Cell differentiation family, Rcd1-like
Nucleotide Protein
Heading Accession and Version

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