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PABPC4 poly(A) binding protein cytoplasmic 4 [ Anas platyrhynchos (mallard) ]

Gene ID: 101802732, updated on 8-Mar-2024

Summary

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Gene symbol
PABPC4
Gene description
poly(A) binding protein cytoplasmic 4
Locus tag
Anapl_06052
See related
EnsemblRapid:ENSAPLG00030021900
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See PABPC4 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
17
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 24 NC_051795.1 (667918..681446)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 24 NC_040069.1 (31206..44513)

Chromosome 24 - NC_051795.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene hes related family bHLH transcription factor with YRPW motif like Neighboring gene small nucleolar RNA SNORA55 Neighboring gene small nucleolar RNA SNORA55 Neighboring gene small nucleolar RNA SNORA55 Neighboring gene peptidylprolyl isomerase E Neighboring gene bone morphogenetic protein 8a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 4
Names
Polyadenylate-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051795.1 Reference ZJU1.0 Primary Assembly

    Range
    667918..681446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038167171.1 → XP_038023099.1  polyadenylate-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8B9SPL9
    Related
    ENSAPLP00030036839.1, ENSAPLT00030057242.1
    Conserved Domains (1) summary
    TIGR01628
    Location:13 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  2. XM_027443805.2 → XP_027299606.2  polyadenylate-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8B9SPL9, U3IQE5
    Related
    ENSAPLP00030036791.1, ENSAPLT00030057169.1
    Conserved Domains (1) summary
    TIGR01628
    Location:13 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  3. XM_038167172.1 → XP_038023100.1  polyadenylate-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8B9SPL9
    Conserved Domains (1) summary
    TIGR01628
    Location:13 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein
Heading Accession and Version

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