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DCN decorin [ Anas platyrhynchos (mallard) ]

Gene ID: 101801962, updated on 8-Mar-2024

Summary

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Gene symbol
DCN
Gene description
decorin
Locus tag
Anapl_08575
See related
EnsemblRapid:ENSAPLG00030015802
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See DCN in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (48370459..48408103)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (154891931..154929531, complement)

Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106014835 Neighboring gene uncharacterized LOC113844512 Neighboring gene uncharacterized LOC119717597 Neighboring gene uncharacterized LOC119717598 Neighboring gene lumican Neighboring gene keratocan

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The effects of endoplasmic reticulum stress response on duck decorin stimulate myotube hypertrophy in myoblasts. Sun L, et al. Mol Cell Biochem, 2013 May. PMID 23385868
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Overexpression of duck decorin increased myogenic determination factor and follistatin expression and decreased myogenin and myostatin expression.
    Title: The effects of endoplasmic reticulum stress response on duck decorin stimulate myotube hypertrophy in myoblasts.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
decorin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051772.1 Reference ZJU1.0 Primary Assembly

    Range
    48370459..48408103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005012380.5 → XP_005012437.1  decorin

    See identical proteins and their annotated locations for XP_005012437.1

    UniProtKB/TrEMBL
    A0A493TU41, R0LLK8, U3J2V4
    Related
    ENSAPLP00030027007.1, ENSAPLT00030041083.1
    Conserved Domains (3) summary
    PRK15370
    Location:68 → 286
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:60 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:52 → 78
    LRRNT; Leucine rich repeat N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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