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RPN1 ribophorin I [ Anas platyrhynchos (mallard) ]

Gene ID: 101801726, updated on 8-Mar-2024

Summary

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Gene symbol
RPN1
Gene description
ribophorin I
Locus tag
Anapl_14016
See related
EnsemblRapid:ENSAPLG00030006705
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See RPN1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 13 NC_051784.1 (12608927..12626329, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 13 NC_040058.1 (19415702..19424101)

Chromosome 13 - NC_051784.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 2 Neighboring gene uncharacterized LOC113845044 Neighboring gene uncharacterized LOC110353508 Neighboring gene RAB7A, member RAS oncogene family Neighboring gene histone H1.10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
Names
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051784.1 Reference ZJU1.0 Primary Assembly

    Range
    12608927..12626329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027467876.2 → XP_027323677.2  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

    UniProtKB/TrEMBL
    U3I9L4
    Related
    ENSAPLP00030013316.1, ENSAPLT00030017712.1
    Conserved Domains (2) summary
    TIGR04523
    Location:571 → 665
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    pfam04597
    Location:103 → 519
    Ribophorin_I; Ribophorin I
Nucleotide Protein
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