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GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 [ Anas platyrhynchos (mallard) ]

Gene ID: 101801588, updated on 8-Mar-2024

Summary

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Gene symbol
GDPD5
Gene description
glycerophosphodiester phosphodiesterase domain containing 5
Locus tag
Anapl_06099
See related
EnsemblRapid:ENSAPLG00030003482
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See GDPD5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (205168974..205322636, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (1764662..1921960)

Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 6 Neighboring gene kelch like family member 35 Neighboring gene uncharacterized LOC119716779 Neighboring gene small nucleolar RNA SNORD15 Neighboring gene serpin family H member 1 Neighboring gene ribosomal protein S3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphodiester phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase domain-containing protein 5
Names
Glycerophosphodiester phosphodiesterase domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051772.1 Reference ZJU1.0 Primary Assembly

    Range
    205168974..205322636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038178295.1 → XP_038034223.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A493SZW4, A0A8B9R5X9
    Related
    ENSAPLP00030007771.1, ENSAPLT00030009763.1
    Conserved Domains (2) summary
    cd08608
    Location:227 → 581
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    NF033218
    Location:39 → 109
    anchor_AmaP; alkaline shock response membrane anchor protein AmaP

  2. XM_038178317.1 → XP_038034245.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8B9QTA8, U3IX23
    Related
    ENSAPLP00030007752.1, ENSAPLT00030009741.1
    Conserved Domains (2) summary
    cd08608
    Location:227 → 576
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    NF033218
    Location:39 → 109
    anchor_AmaP; alkaline shock response membrane anchor protein AmaP

  3. XM_038178301.1 → XP_038034229.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A493SZW4, A0A8B9R5X9
    Conserved Domains (2) summary
    cd08608
    Location:227 → 581
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    NF033218
    Location:39 → 109
    anchor_AmaP; alkaline shock response membrane anchor protein AmaP

  4. XM_038178306.1 → XP_038034234.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A493SZW4, A0A8B9R5X9
    Conserved Domains (2) summary
    cd08608
    Location:227 → 581
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    NF033218
    Location:39 → 109
    anchor_AmaP; alkaline shock response membrane anchor protein AmaP

  5. XM_038178313.1 → XP_038034241.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A493SZW4, A0A8B9R5X9
    Conserved Domains (2) summary
    cd08608
    Location:227 → 581
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
    NF033218
    Location:39 → 109
    anchor_AmaP; alkaline shock response membrane anchor protein AmaP

  6. XM_038178322.1 → XP_038034250.1  glycerophosphodiester phosphodiesterase domain-containing protein 5 isoform X3

    UniProtKB/TrEMBL
    R0KXL9
    Conserved Domains (1) summary
    cd08608
    Location:158 → 512
    GDPD_GDE2; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins
Nucleotide Protein
Heading Accession and Version

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