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LSM8 LSM8 homolog, U6 small nuclear RNA associated [ Anas platyrhynchos (mallard) ]

Gene ID: 101801164, updated on 8-Mar-2024

Summary

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Gene symbol
LSM8
Gene description
LSM8 homolog, U6 small nuclear RNA associated
Locus tag
Anapl_17449
See related
EnsemblRapid:ENSAPLG00030023390
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See LSM8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (25722095..25727656)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (177498665..177504880, complement)

Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110351590 Neighboring gene uncharacterized LOC113843706 Neighboring gene ankyrin repeat domain-containing protein 26 Neighboring gene ankyrin repeat domain 7 Neighboring gene moesin/ezrin/radixin homolog 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LSM8 homolog, U6 small nuclear RNA associated
Names
U6 snRNA-associated Sm-like protein LSm8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051772.1 Reference ZJU1.0 Primary Assembly

    Range
    25722095..25727656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027457790.2 → XP_027313591.1  LSM8 homolog, U6 small nuclear RNA associated

    UniProtKB/TrEMBL
    A0A8B9TPG8, U3IBP3
    Related
    ENSAPLP00030039228.1, ENSAPLT00030061166.1
    Conserved Domains (1) summary
    cd01727
    Location:3 → 92
    LSm8; Like-Sm protein 8
Nucleotide Protein
Heading Accession and Version

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