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HABP4 hyaluronan binding protein 4 [ Anas platyrhynchos (mallard) ]

Gene ID: 101801139, updated on 8-Mar-2024

Summary

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Gene symbol
HABP4
Gene description
hyaluronan binding protein 4
Locus tag
Anapl_15881
See related
EnsemblRapid:ENSAPLG00030014034
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See HABP4 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
8
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) Z NC_051804.1 (44949006..44975808)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) Z NC_040075.1 (41901117..41925527)

Chromosome Z - NC_051804.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member D2 Neighboring gene zinc finger protein 367 Neighboring gene cell division cycle 14B Neighboring gene peroxiredoxin like 2C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intracellular hyaluronan-binding protein 4
Names
Intracellular hyaluronan-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051804.1 Reference ZJU1.0 Primary Assembly

    Range
    44949006..44975808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027446458.2 → XP_027302259.2  intracellular hyaluronan-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8B9SYZ0, U3IKS7
    Related
    ENSAPLP00030024324.1, ENSAPLT00030036159.1
    Conserved Domains (2) summary
    pfam04774
    Location:180 → 284
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:6 → 137
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

  2. XM_038169947.1 → XP_038025875.1  intracellular hyaluronan-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A493TTD6, A0A8B9SYI4
    Related
    ENSAPLP00030024347.1, ENSAPLT00030036205.1
    Conserved Domains (2) summary
    pfam04774
    Location:180 → 260
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:6 → 137
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
Nucleotide Protein
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