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LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [ Anas platyrhynchos (mallard) ]

Gene ID: 101800680, updated on 8-Mar-2024

Summary

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Gene symbol
LSM6
Gene description
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Locus tag
Anapl_03338
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See LSM6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 4 NC_051775.1 (34592903..34597818, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 4 NC_040049.1 (34630995..34635885, complement)

Chromosome 4 - NC_051775.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 10 member 7 Neighboring gene uncharacterized LOC119716736 Neighboring gene reeler domain containing 1 Neighboring gene zinc finger protein 827 Neighboring gene uncharacterized LOC119716738 Neighboring gene metabolism of cobalamin associated A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sno(s)RNA-containing ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051775.1 Reference ZJU1.0 Primary Assembly

    Range
    34592903..34597818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027456702.2 → XP_027312503.1  U6 snRNA-associated Sm-like protein LSm6

    UniProtKB/TrEMBL
    A0A8B9SF62, R0K5E8
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6

  2. XM_027456701.2 → XP_027312502.1  U6 snRNA-associated Sm-like protein LSm6

    UniProtKB/TrEMBL
    A0A8B9SF62, R0K5E8
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6
Nucleotide Protein
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