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SYNJ2 synaptojanin 2 [ Anas platyrhynchos (mallard) ]

Gene ID: 101800513, updated on 8-Mar-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
Locus tag
Anapl_16397
See related
EnsemblRapid:ENSAPLG00030028539
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
30
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 3 NC_051774.1 (55428370..55498439)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 3 NC_040048.1 (54499802..54563234)

Chromosome 3 - NC_051774.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene sorting nexin 9 Neighboring gene uncharacterized LOC106018982 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5 Neighboring gene TUB like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2
Names
Synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051774.1 Reference ZJU1.0 Primary Assembly

    Range
    55428370..55498439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038177449.1 → XP_038033377.1  synaptojanin-2 isoform X2

    UniProtKB/TrEMBL
    U3I4A0
    Conserved Domains (4) summary
    cd09099
    Location:545 → 880
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1203 → 1503
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:41 → 504
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:879 → 1024
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038177448.1 → XP_038033376.1  synaptojanin-2 isoform X1

    UniProtKB/TrEMBL
    U3I4A0
    Conserved Domains (4) summary
    cd09099
    Location:547 → 882
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1205 → 1505
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:25 → 506
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:881 → 1026
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_038177450.1 → XP_038033378.1  synaptojanin-2 isoform X3

    UniProtKB/TrEMBL
    U3I4A0
    Conserved Domains (4) summary
    cd09099
    Location:540 → 875
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1198 → 1498
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:25 → 499
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:874 → 1019
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_038177451.1 → XP_038033379.1  synaptojanin-2 isoform X4

    UniProtKB/TrEMBL
    A0A493TZR0, U3I4A0
    Conserved Domains (4) summary
    cd09099
    Location:537 → 872
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1195 → 1495
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:25 → 496
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:871 → 1016
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_027454406.2 → XP_027310207.2  synaptojanin-2 isoform X5

    UniProtKB/TrEMBL
    U3I4A0
    Related
    ENSAPLP00030044583.1, ENSAPLT00030074225.1
    Conserved Domains (4) summary
    cd09099
    Location:528 → 863
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1186 → 1486
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:25 → 487
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1007
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_038177452.1 → XP_038033380.1  synaptojanin-2 isoform X6

    UniProtKB/TrEMBL
    A0A493TM69
    Conserved Domains (4) summary
    cd09099
    Location:422 → 757
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:1080 → 1380
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:2 → 381
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:756 → 901
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_038177453.1 → XP_038033381.1  synaptojanin-2 isoform X7

    UniProtKB/TrEMBL
    A0A493TM69
    Conserved Domains (4) summary
    cd09099
    Location:243 → 578
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03247
    Location:901 → 1201
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:4 → 202
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:577 → 722
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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