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EXOSC8 exosome component 8 [ Anas platyrhynchos (mallard) ]

Gene ID: 101799603, updated on 11-Apr-2024

Summary

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Gene symbol
EXOSC8
Gene description
exosome component 8
Locus tag
Anapl_07243
See related
EnsemblRapid:ENSAPLG00030024168
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See EXOSC8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (181679815..181692013, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (24542441..24555661)

Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113845444 Neighboring gene periostin Neighboring gene uncharacterized LOC106016738 Neighboring gene SPT20 homolog, SAGA complex component Neighboring gene uncharacterized LOC119715836 Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene SMAD family member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP43
Names
Exosome complex exonuclease RRP43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051772.1 Reference ZJU1.0 Primary Assembly

    Range
    181679815..181692013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005018347.5 → XP_005018404.2  exosome complex component RRP43

    UniProtKB/TrEMBL
    A0A8B9QYY3, U3IK03
    Related
    ENSAPLP00030040304.1, ENSAPLT00030063187.1
    Conserved Domains (1) summary
    cd11369
    Location:6 → 266
    RNase_PH_RRP43; RRP43 subunit of eukaryotic exosome
Nucleotide Protein
Heading Accession and Version

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