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CNOT6 CCR4-NOT transcription complex subunit 6 [ Anas platyrhynchos (mallard) ]

Gene ID: 101798399, updated on 8-Mar-2024

Summary

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Gene symbol
CNOT6
Gene description
CCR4-NOT transcription complex subunit 6
Locus tag
Anapl_15320
See related
EnsemblRapid:ENSAPLG00030003801
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See CNOT6 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 14 NC_051785.1 (5077627..5109772)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 14 NC_040059.1 (6883902..6903329)

Chromosome 14 - NC_051785.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106019038 Neighboring gene mitogen-activated protein kinase 9 Neighboring gene glutamine-fructose-6-phosphate transaminase 2 Neighboring gene uncharacterized LOC101798211 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 2 Neighboring gene uncharacterized LOC110353554

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051785.1 Reference ZJU1.0 Primary Assembly

    Range
    5077627..5109772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038186606.1 → XP_038042534.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    R0L9D1, U3IZ33
    Related
    ENSAPLP00030008345.1, ENSAPLT00030010512.1
    Conserved Domains (3) summary
    COG4886
    Location:44 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:191 → 540
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_038186605.1 → XP_038042533.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    R0L9D1, U3IZ33
    Conserved Domains (3) summary
    COG4886
    Location:44 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:191 → 540
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  3. XM_038186607.1 → XP_038042535.1  CCR4-NOT transcription complex subunit 6 isoform X2

    Related
    ENSAPLP00030008379.1, ENSAPLT00030010563.1
    Conserved Domains (3) summary
    COG4886
    Location:44 → 158
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:186 → 535
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  4. XM_013105341.4 → XP_012960795.3  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    R0L9D1, U3IZ33
    Conserved Domains (3) summary
    COG4886
    Location:44 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:191 → 540
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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