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VLDLR very low density lipoprotein receptor [ Anas platyrhynchos (mallard) ]

Gene ID: 101796537, updated on 8-Mar-2024

Summary

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Gene symbol
VLDLR
Gene description
very low density lipoprotein receptor
Locus tag
Anapl_02910
See related
EnsemblRapid:ENSAPLG00030009967
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See VLDLR in Genome Data Viewer
Location:
chromosome: Z
Exon count:
18
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) Z NC_051804.1 (28919802..28935189)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) Z NC_040075.1 (26882587..26897876)

Chromosome Z - NC_051804.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110351337 Neighboring gene uncharacterized LOC113840140 Neighboring gene uncharacterized LOC119714546 Neighboring gene potassium voltage-gated channel modifier subfamily V member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and expression profiling of the VLDLR gene associated with egg performance in duck (Anas platyrhynchos). Wang C, et al. Genet Sel Evol, 2011 Aug 5. PMID 21819592, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very low-density lipoprotein receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310401.1 → NP_001297330.1  very low-density lipoprotein receptor precursor

    See identical proteins and their annotated locations for NP_001297330.1

    Status: PROVISIONAL

    Source sequence(s)
    JF950612
    UniProtKB/TrEMBL
    G1D8T9, G1D8U0
    Related
    ENSAPLP00030018782.1, ENSAPLT00030026779.1
    Conserved Domains (8) summary
    smart00192
    Location:197 → 229
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:515 → 554
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:401 → 431
    EGF_CA; Calcium-binding EGF-like domain
    cd00112
    Location:38 → 72
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00057
    Location:242 → 278
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
    pfam00058
    Location:575 → 615
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam14670
    Location:365 → 399
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00104
    Location:325 → 355
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051804.1 Reference ZJU1.0 Primary Assembly

    Range
    28919802..28935189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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