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GPC5 glypican 5 [ Anas platyrhynchos (mallard) ]

Gene ID: 101795273, updated on 8-Mar-2024

Summary

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Gene symbol
GPC5
Gene description
glypican 5
Locus tag
Anapl_15872
See related
EnsemblRapid:ENSAPLG00030018753
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See GPC5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 1 NC_051772.1 (154781652..155544178, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 1 NC_040046.1 (50251100..50995858)

Chromosome 1 - NC_051772.1Genomic Context describing neighboring genes Neighboring gene dopachrome tautomerase Neighboring gene glypican 6 Neighboring gene uncharacterized LOC106015473 Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC113839700 Neighboring gene uncharacterized LOC106016762 Neighboring gene feather beta keratin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051772.1 Reference ZJU1.0 Primary Assembly

    Range
    154781652..155544178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038173480.1 → XP_038029408.1  glypican-5 isoform X2

    UniProtKB/TrEMBL
    A0A8B9T838
    Conserved Domains (1) summary
    pfam01153
    Location:1 → 498
    Glypican

  2. XM_027443115.2 → XP_027298916.2  glypican-5 isoform X1

    UniProtKB/TrEMBL
    A0A8B9T838
    Related
    ENSAPLP00030031318.1, ENSAPLT00030048876.1
    Conserved Domains (1) summary
    pfam01153
    Location:18 → 565
    Glypican

  3. XM_038173481.1 → XP_038029409.1  glypican-5 isoform X3

    UniProtKB/TrEMBL
    A0A8B9T838
    Related
    ENSAPLP00030031247.1, ENSAPLT00030048729.1
    Conserved Domains (1) summary
    pfam01153
    Location:18 → 462
    Glypican
Nucleotide Protein
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