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PABPC1 poly(A) binding protein cytoplasmic 1 [ Anas platyrhynchos (mallard) ]

Gene ID: 101794091, updated on 8-Mar-2024

Summary

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Gene symbol
PABPC1
Gene description
poly(A) binding protein cytoplasmic 1
Locus tag
Anapl_03895
See related
EnsemblRapid:ENSAPLG00030026459
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See PABPC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 2 NC_051773.1 (23609757..23625178)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 2 NC_040047.1 (134934750..134949745, complement)

Chromosome 2 - NC_051773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110354028 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta Neighboring gene uncharacterized LOC106019363 Neighboring gene sorting nexin 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 1
Names
Polyadenylate-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051773.1 Reference ZJU1.0 Primary Assembly

    Range
    23609757..23625178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027452535.2 → XP_027308336.1  polyadenylate-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A493U0I3
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 613
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  2. XM_027452534.2 → XP_027308335.1  polyadenylate-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A493U0I3, A0A8B9QXC2, U3I0W5
    Related
    ENSAPLP00030042833.1, ENSAPLT00030068909.1
    Conserved Domains (1) summary
    TIGR01628
    Location:11 → 616
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein
Heading Accession and Version

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