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DEGS2 delta 4-desaturase, sphingolipid 2 [ Anas platyrhynchos (mallard) ]

Gene ID: 101791732, updated on 8-Mar-2024

Summary

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Gene symbol
DEGS2
Gene description
delta 4-desaturase, sphingolipid 2
Locus tag
Anapl_00752
See related
EnsemblRapid:ENSAPLG00030001572
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See DEGS2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 5 NC_051776.1 (13017844..13034410)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 5 NC_040050.1 (16594774..16611124)

Chromosome 5 - NC_051776.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 47 Neighboring gene solute carrier family 25 member 29 Neighboring gene YY1 transcription factor Neighboring gene uncharacterized LOC113843683 Neighboring gene Enah/Vasp-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingolipid delta-4 desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingosine hydroxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingolipid delta(4)-desaturase/C4-monooxygenase DES2
Names
Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051776.1 Reference ZJU1.0 Primary Assembly

    Range
    13017844..13034410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027457500.2 → XP_027313301.1  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X2

    UniProtKB/TrEMBL
    R0JTD6, U3I774
    Related
    ENSAPLP00030003582.1, ENSAPLT00030004381.1

  2. XM_027457499.2 → XP_027313300.2  sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X1

    Related
    ENSAPLP00030003576.1, ENSAPLT00030004375.1
    Conserved Domains (2) summary
    cd03508
    Location:26 → 274
    Delta4-sphingolipid-FADS-like; The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase ...
    pfam08557
    Location:7 → 42
    Lipid_DES; Sphingolipid Delta4-desaturase (DES)
Nucleotide Protein
Heading Accession and Version

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