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C1D C1D nuclear receptor corepressor [ Anas platyrhynchos (mallard) ]

Gene ID: 101791064, updated on 8-Mar-2024

Summary

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Gene symbol
C1D
Gene description
C1D nuclear receptor corepressor
Locus tag
Anapl_15343
See related
EnsemblRapid:ENSAPLG00030003498
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See C1D in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 3 NC_051774.1 (9777753..9790002)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 3 NC_040048.1 (12970404..12989316)

Chromosome 3 - NC_051774.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 3 regulatory subunit B, alpha Neighboring gene dynein axonemal assembly factor 10 Neighboring gene partner of NOB1 homolog Neighboring gene uncharacterized LOC106018855 Neighboring gene uncharacterized LOC110353759

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear nucleic acid-binding protein C1D
Names
Nuclear nucleic acid-binding protein C1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051774.1 Reference ZJU1.0 Primary Assembly

    Range
    9777753..9790002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027453391.2 → XP_027309192.1  nuclear nucleic acid-binding protein C1D isoform X1

    UniProtKB/TrEMBL
    A0A8B9T8N6, R0JJX7
    Conserved Domains (1) summary
    pfam04000
    Location:21 → 99
    Sas10_Utp3; Sas10/Utp3/C1D family

  2. XM_027453389.2 → XP_027309190.1  nuclear nucleic acid-binding protein C1D isoform X1

    UniProtKB/TrEMBL
    A0A8B9T8N6, R0JJX7
    Conserved Domains (1) summary
    pfam04000
    Location:21 → 99
    Sas10_Utp3; Sas10/Utp3/C1D family

  3. XM_027453392.2 → XP_027309193.1  nuclear nucleic acid-binding protein C1D isoform X1

    UniProtKB/TrEMBL
    A0A8B9T8N6, R0JJX7
    Conserved Domains (1) summary
    pfam04000
    Location:21 → 99
    Sas10_Utp3; Sas10/Utp3/C1D family

  4. XM_005025169.5 → XP_005025226.1  nuclear nucleic acid-binding protein C1D isoform X1

    See identical proteins and their annotated locations for XP_005025226.1

    UniProtKB/TrEMBL
    A0A8B9T8N6, R0JJX7
    Conserved Domains (1) summary
    pfam04000
    Location:21 → 99
    Sas10_Utp3; Sas10/Utp3/C1D family

  5. XM_013104745.4 → XP_012960199.1  nuclear nucleic acid-binding protein C1D isoform X1

    See identical proteins and their annotated locations for XP_012960199.1

    UniProtKB/TrEMBL
    A0A8B9T8N6, R0JJX7
    Conserved Domains (1) summary
    pfam04000
    Location:21 → 99
    Sas10_Utp3; Sas10/Utp3/C1D family

  6. XM_005025167.5 → XP_005025224.1  nuclear nucleic acid-binding protein C1D isoform X1

    See identical proteins and their annotated locations for XP_005025224.1

    UniProtKB/TrEMBL
    A0A8B9T8N6, R0JJX7
    Conserved Domains (1) summary
    pfam04000
    Location:21 → 99
    Sas10_Utp3; Sas10/Utp3/C1D family

  7. XM_038177341.1 → XP_038033269.1  nuclear nucleic acid-binding protein C1D isoform X2

    UniProtKB/TrEMBL
    R0JJX7
    Related
    ENSAPLP00030007754.1, ENSAPLT00030009743.1
    Conserved Domains (1) summary
    pfam04000
    Location:33 → 111
    Sas10_Utp3; Sas10/Utp3/C1D family

  8. XM_021276105.1 → XP_021131780.1  nuclear nucleic acid-binding protein C1D isoform X1

    UniProtKB/TrEMBL
    A0A8B9T8N6, R0JJX7
    Related
    ENSAPLP00030007763.1, ENSAPLT00030009754.1
    Conserved Domains (1) summary
    pfam04000
    Location:21 → 99
    Sas10_Utp3; Sas10/Utp3/C1D family
Nucleotide Protein
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