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SCD5 stearoyl-CoA desaturase 5 [ Anas platyrhynchos (mallard) ]

Gene ID: 101790208, updated on 8-Mar-2024

Summary

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Gene symbol
SCD5
Gene description
stearoyl-CoA desaturase 5
Locus tag
Anapl_05950
See related
EnsemblRapid:ENSAPLG00030003115
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See SCD5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 4 NC_051775.1 (44452266..44465398, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 4 NC_040049.1 (44542038..44558205, complement)

Chromosome 4 - NC_051775.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein D like Neighboring gene enolase-phosphatase 1 Neighboring gene transmembrane protein 150C Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene lin-54 DREAM MuvB core complex component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stearoyl-CoA desaturase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051775.1 Reference ZJU1.0 Primary Assembly

    Range
    44452266..44465398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038177997.1 → XP_038033925.1  stearoyl-CoA desaturase 5 isoform X1

    Related
    ENSAPLP00030006924.1, ENSAPLT00030008743.1
    Conserved Domains (1) summary
    cd03505
    Location:38 → 306
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

  2. XM_027456926.2 → XP_027312727.1  stearoyl-CoA desaturase 5 isoform X2

    UniProtKB/TrEMBL
    A0A8B9R5K3, R0LVD8
    Related
    ENSAPLP00030006916.1, ENSAPLT00030008733.1
    Conserved Domains (1) summary
    cd03505
    Location:38 → 275
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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