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PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [ Anas platyrhynchos (mallard) ]

Gene ID: 101790091, updated on 8-Mar-2024

Summary

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Gene symbol
PAFAH1B1
Gene description
platelet activating factor acetylhydrolase 1b regulatory subunit 1
Locus tag
Anapl_05838
See related
EnsemblRapid:ENSAPLG00030025774
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See PAFAH1B1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 20 NC_051791.1 (706197..737504, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 20 NC_040065.1 (5979686..6012742, complement)

Chromosome 20 - NC_051791.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 92B Neighboring gene clustered mitochondria homolog Neighboring gene uncharacterized LOC119713249 Neighboring gene MAX network transcriptional repressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor acetylhydrolase IB subunit beta
Names
Platelet-activating factor acetylhydrolase IB subunit alpha
lissencephaly-1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051791.1 Reference ZJU1.0 Primary Assembly

    Range
    706197..737504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027472459.2 → XP_027328260.1  platelet-activating factor acetylhydrolase IB subunit beta

    UniProtKB/TrEMBL
    A0A493U3N8, A0A8B9T7C0
    Conserved Domains (3) summary
    smart00667
    Location:7 → 39
    LisH; Lissencephaly type-1-like homology motif
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]

  2. XM_027472460.2 → XP_027328261.1  platelet-activating factor acetylhydrolase IB subunit beta

    UniProtKB/TrEMBL
    A0A493U3N8, A0A8B9T7C0
    Related
    ENSAPLP00030042142.1, ENSAPLT00030067188.1
    Conserved Domains (3) summary
    smart00667
    Location:7 → 39
    LisH; Lissencephaly type-1-like homology motif
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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