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LOC101746347 laminin subunit alpha lam-3 [ Bombyx mori (domestic silkworm) ]

Gene ID: 101746347, updated on 10-May-2024

Summary

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Gene symbol
LOC101746347
Gene description
laminin subunit alpha lam-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See LOC101746347 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
52
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 4 NC_085110.1 (814224..964602)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 4 NC_051361.1 (623689..775354)

Chromosome 4 - NC_085110.1Genomic Context describing neighboring genes Neighboring gene maltase A1 Neighboring gene lost and found Neighboring gene uncharacterized LOC134201866 Neighboring gene uncharacterized LOC101745293 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC134201868 Neighboring gene uncharacterized LOC101745433 Neighboring gene sodium/potassium-transporting ATPase subunit beta-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha lam-3
Names
laminin subunit alpha-1
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085110.1 Reference ASM3026992v2 Primary Assembly

    Range
    814224..964602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038010598.2 → XP_037866526.1  laminin subunit alpha lam-3

    UniProtKB/TrEMBL
    A0A8R2LU89
    Conserved Domains (9) summary
    pfam03302
    Location:763 → 1054
    VSP; Giardia variant-specific surface protein
    smart00180
    Location:953 → 998
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:703 → 745
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2524 → 2684
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1621 → 1839
    Laminin_I; Laminin Domain I
    pfam00052
    Location:1258 → 1396
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1135 → 1187
    Laminin_EGF; Laminin EGF domain
    pfam02210
    Location:2768 → 2895
    Laminin_G_2; Laminin G domain
    cl02806
    Location:52 → 245
    Laminin_N; Laminin N-terminal (Domain VI)

RNA

  1. XR_005244604.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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