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LAMA1 laminin subunit alpha 1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101644673, updated on 20-Sep-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103955.1 (2901236..3168929)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558714.1 (2592986..2860364)

NW_022103955.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26-like Neighboring gene leucine rich repeat containing 30 Neighboring gene Rho GTPase activating protein 28 Neighboring gene 60S ribosomal protein L6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103955.1 Reference ASM31398v2 Primary Assembly

    Range
    2901236..3168929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013004706.2 → XP_012860160.1  laminin subunit alpha-1

    Conserved Domains (9) summary
    smart00136
    Location:142 → 389
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:1072 → 1116
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1523 → 1561
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2428 → 2584
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1696 → 1939
    Laminin_I; Laminin Domain I
    pfam00054
    Location:2865 → 2994
    Laminin_G_1; Laminin G domain
    pfam00052
    Location:689 → 828
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1165 → 1213
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:2132 → 2266
    Laminin_II; Laminin Domain II
Nucleotide Protein
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