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CDH13 cadherin 13 [ Papio anubis (olive baboon) ]

Gene ID: 101007207, updated on 8-Mar-2024

Summary

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Gene symbol
CDH13
Gene description
cadherin 13
See related
Ensembl:ENSPANG00000016956
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See CDH13 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
16
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 18 NC_044993.1 (6201083..7455430, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 20 NC_018171.2 (64489384..65748339)

Chromosome 18 - NC_044993.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103880579 Neighboring gene uncharacterized LOC108583576 Neighboring gene heat shock factor binding protein 1 Neighboring gene uncharacterized LOC103880576 Neighboring gene M-phase phosphoprotein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044993.1 Reference Panubis1.0 Primary Assembly

    Range
    6201083..7455430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017953611.2 → XP_017809100.1  cadherin-13 isoform X2

    UniProtKB/TrEMBL
    A0A8I5NJJ6

  2. XM_017953610.2 → XP_017809099.1  cadherin-13 isoform X1

    UniProtKB/TrEMBL
    A0A096NWW3, A0A8I5NJJ6
    Related
    ENSPANP00000017549.2, ENSPANT00000023883.3
    Conserved Domains (5) summary
    cd11304
    Location:488 → 581
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:161 → 243
    CA; Cadherin repeats
    pfam00028
    Location:368 → 469
    Cadherin; Cadherin domain
    pfam08758
    Location:27 → 112
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:589 → 680
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  3. XM_017953612.3 → XP_017809101.1  cadherin-13 isoform X3

    UniProtKB/TrEMBL
    A0A2I3MEP1, A0A8I5NKF0
    Related
    ENSPANP00000034169.1, ENSPANT00000032832.2
Nucleotide Protein
Heading Accession and Version

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