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Lamb1 laminin subunit beta 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100757343, updated on 8-Mar-2024

Summary

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Gene symbol
Lamb1
Gene description
laminin subunit beta 1
Locus tag
I79_017505
See related
Ensembl:ENSCGRG00015004556
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Lamb1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
35
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614696.1 (275623..343838, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (168762060..168830522)

NW_003614696.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 3 Neighboring gene dihydrolipoamide dehydrogenase Neighboring gene 40S ribosomal protein S7-like Neighboring gene uncharacterized LOC103161875

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit beta-1
Names
Laminin subunit beta-1
laminin B1
laminin, beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614696.1 Reference CriGri_1.0 Primary Assembly

    Range
    275623..343838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007649941.4 → XP_007648131.1  laminin subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A061I6V4
    Conserved Domains (8) summary
    smart00180
    Location:821 → 866
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00283
    Location:1501 → 1739
    MA; Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)
    cd00055
    Location:505 → 556
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00053
    Location:869 → 917
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:92 → 317
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam05276
    Location:1642 → 1834
    SH3BP5; SH3 domain-binding protein 5 (SH3BP5)
    cl09111
    Location:1265 → 1354
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl23763
    Location:1504 → 1688
    MCP_signal; Methyl-accepting chemotaxis protein (MCP), signaling domain

  2. XM_016979155.3 → XP_016834644.1  laminin subunit beta-1 isoform X3

    UniProtKB/TrEMBL
    A0A9J7FZY2, G3I278

  3. XM_027441398.2 → XP_027297199.1  laminin subunit beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JQL4, G3I278

  4. XM_027441399.2 → XP_027297200.1  laminin subunit beta-1 isoform X4

    UniProtKB/TrEMBL
    A0A9J7G0P6, G3I278

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    168762060..168830522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027416975.2 → XP_027272776.1  laminin subunit beta-1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2MC44, A0A9J7JRR4
    Related
    ENSCGRP00015005978.2, ENSCGRT00015007392.2

  2. XM_027416974.1 → XP_027272775.1  laminin subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A061I6V4, A0A8C2MAQ7
    Related
    ENSCGRP00015049596.1, ENSCGRT00015051280.1

  3. XM_027416978.2 → XP_027272779.1  laminin subunit beta-1 isoform X3

    UniProtKB/TrEMBL
    A0A9J7FZY2, G3I278
    Related
    ENSCGRP00015005862.2, ENSCGRT00015007245.2

  4. XM_027416976.1 → XP_027272777.1  laminin subunit beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JQL4, G3I278
    Related
    ENSCGRP00015005931.2, ENSCGRT00015007327.2

  5. XM_027416979.2 → XP_027272780.1  laminin subunit beta-1 isoform X4

    UniProtKB/TrEMBL
    A0A9J7G0P6, G3I278
Nucleotide Protein Strain
Heading Accession and Version

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