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LOC100705890 RNA exonuclease 1 homolog [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100705890, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100705890
Gene description
RNA exonuclease 1 homolog
See related
Ensembl:ENSONIG00000016897
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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Genomic context

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See LOC100705890 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
18
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG12 NC_031977.2 (28648354..28669319)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG12 NC_031977.1 (32830217..32851263)

Linkage Group LG12 - NC_031977.2Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-27B Neighboring gene polymerase (DNA directed) iota Neighboring gene UDP-glucuronosyltransferase 2A2 Neighboring gene UDP-glucuronosyltransferase 2A2-like Neighboring gene uncharacterized LOC112841801 Neighboring gene uncharacterized LOC112841804 Neighboring gene UDP-glucuronosyltransferase 2A2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA exonuclease 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031977.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    28648354..28669319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025896944.1 → XP_025752729.1  RNA exonuclease 1 homolog isoform X4

    UniProtKB/TrEMBL
    A0A669EDL5
    Related
    ENSONIP00000070853.1, ENSONIT00000053526.1
    Conserved Domains (3) summary
    cd06145
    Location:1005 → 1115
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    pfam15870
    Location:773 → 905
    EloA-BP1; ElonginA binding-protein 1
    cl25574
    Location:65 → 289
    TOP2c; TopoisomeraseII

  2. XM_013277610.3 → XP_013133064.1  RNA exonuclease 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A669EDL5
    Conserved Domains (3) summary
    cd06145
    Location:1005 → 1154
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    COG0847
    Location:1018 → 1154
    DnaQ; DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
    pfam15870
    Location:773 → 905
    EloA-BP1; ElonginA binding-protein 1

  3. XM_005459761.4 → XP_005459818.1  RNA exonuclease 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A669EDL5, I3KJK9, I3KJL0
    Related
    ENSONIP00000076452.1, ENSONIT00000068244.1
    Conserved Domains (3) summary
    cd06145
    Location:1004 → 1153
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    COG0847
    Location:1017 → 1153
    DnaQ; DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
    pfam15870
    Location:773 → 904
    EloA-BP1; ElonginA binding-protein 1

  4. XM_005459762.4 → XP_005459819.1  RNA exonuclease 1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A669EDL5
    Conserved Domains (3) summary
    cd06145
    Location:1004 → 1153
    REX1_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins
    COG0847
    Location:1017 → 1153
    DnaQ; DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
    pfam15870
    Location:772 → 904
    EloA-BP1; ElonginA binding-protein 1

RNA

  1. XR_002064017.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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