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rexo4 REX4 homolog, 3'-5' exonuclease [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100700793, updated on 8-Mar-2024

Summary

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Gene symbol
rexo4
Gene description
REX4 homolog, 3'-5' exonuclease
See related
Ensembl:ENSONIG00000020052
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
human zebrafish all
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Genomic context

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See rexo4 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
8
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (18117950..18122794)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (18788661..18793539)

Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type H Neighboring gene putative nuclease HARBI1 Neighboring gene uncharacterized LOC112847721 Neighboring gene potassium voltage-gated channel subfamily A member 7-like Neighboring gene potassium voltage-gated channel, Shaw-related subfamily, member 3b Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class P

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA exonuclease 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    18117950..18122794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003438623.5 → XP_003438671.1  RNA exonuclease 4

    UniProtKB/TrEMBL
    I3KVW1
    Related
    ENSONIP00000025257.2, ENSONIT00000025278.2
    Conserved Domains (2) summary
    cd06144
    Location:241 → 392
    REX4_like; DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins
    COG0847
    Location:238 → 391
    DnaQ; DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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