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smfn small fragment nuclease [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100698641, updated on 8-Mar-2024

Summary

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Gene symbol
smfn
Gene description
small fragment nuclease
See related
Ensembl:ENSONIG00000001954
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
rexo2
Orthologs
human zebrafish all
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Genomic context

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See smfn in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
7
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (1100748..1112438, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG3b NC_031968.1 (38781275..38792849)

Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109200365 Neighboring gene uncharacterized LOC109196756 Neighboring gene uncharacterized LOC112846897 Neighboring gene E3 ubiquitin-protein ligase RNF182 Neighboring gene small nuclear ribonucleoprotein polypeptides B and B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oligoribonuclease, mitochondrial
Names
RNA exonuclease 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    1100748..1112438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003459242.5 → XP_003459290.2  oligoribonuclease, mitochondrial

    UniProtKB/TrEMBL
    A0A669DDC5
    Related
    ENSONIP00000058647.1, ENSONIT00000043885.1
    Conserved Domains (2) summary
    cd06135
    Location:69 → 241
    Orn; DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins
    COG0847
    Location:59 → 225
    DnaQ; DNA polymerase III, epsilon subunit or related 3'-5' exonuclease [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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