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GREB1L GREB1 like retinoic acid receptor coactivator [ Sus scrofa (pig) ]

Gene ID: 100524319, updated on 17-Aug-2024

Summary

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Official Symbol
GREB1Lprovided by VGNC
Official Full Name
GREB1 like retinoic acid receptor coactivatorprovided by VGNC
Primary source
VGNC:VGNC:96584
See related
Ensembl:ENSSSCG00000003699
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 4.8), psoas major muscle (RPKM 1.1) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GREB1L in Genome Data Viewer
Location:
chromosome: 6
Exon count:
33
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (106545882..106693711)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (98943800..99199449)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene proteolipid protein 2 pseudogene Neighboring gene formin-like protein 5 Neighboring gene uncharacterized LOC110261181 Neighboring gene uncharacterized LOC110261180 Neighboring gene establishment of sister chromatid cohesion N-acetyltransferase 1 Neighboring gene small nuclear ribonucleoprotein D1 polypeptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: GREB1-like protein
Names
growth regulation by estrogen in breast cancer 1 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    106545882..106693711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021096163.1 → XP_020951822.1  LOW QUALITY PROTEIN: GREB1-like protein

    UniProtKB/TrEMBL
    A0A480LSG1, A0A4X1VNX8
    Related
    ENSSSCP00000004006.4, ENSSSCT00000004098.5
    Conserved Domains (1) summary
    pfam15782
    Location:1 → 1911
    GREB1; Gene regulated by oestrogen in breast cancer
Nucleotide Protein
Heading Accession and Version

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