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LTBP3 latent transforming growth factor beta binding protein 3 [ Sus scrofa (pig) ]

Gene ID: 100517877, updated on 17-Aug-2024

Summary

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Official Symbol
LTBP3provided by VGNC
Official Full Name
latent transforming growth factor beta binding protein 3provided by VGNC
Primary source
VGNC:VGNC:89887
See related
Ensembl:ENSSSCG00000012985
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 71.5), subcutaneous adipose (RPKM 32.2) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LTBP3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (6701455..6720191)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (5843784..5861806, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene EH domain binding protein 1 like 1 Neighboring gene family with sequence similarity 89 member B Neighboring gene zinc ribbon domain containing 2 Neighboring gene SCY1 like pseudokinase 1 Neighboring gene uncharacterized LOC102163816 Neighboring gene uncharacterized LOC100513133

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
latent-transforming growth factor beta-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6701455..6720191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021082854.1 → XP_020938513.1  latent-transforming growth factor beta-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A4X1USX5
    Conserved Domains (4) summary
    smart00179
    Location:741 → 780
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:657 → 691
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:415 → 454
    TB; TB domain
    cl26464
    Location:487 → 574
    Atrophin-1; Atrophin-1 family

  2. XM_021082855.1 → XP_020938514.1  latent-transforming growth factor beta-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A4X1USX5
    Conserved Domains (4) summary
    smart00179
    Location:737 → 776
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:653 → 687
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:416 → 455
    TB; TB domain
    cl26464
    Location:488 → 570
    Atrophin-1; Atrophin-1 family

  3. XM_005660703.3 → XP_005660760.2  latent-transforming growth factor beta-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1USX5, A0A8D0TJ19, F1RRJ9
    Related
    ENSSSCP00000013809.3, ENSSSCT00000014195.5
    Conserved Domains (4) summary
    smart00179
    Location:742 → 781
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:658 → 692
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:416 → 455
    TB; TB domain
    cl26464
    Location:488 → 575
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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