U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RNF14 ring finger protein 14 [ Sus scrofa (pig) ]

Gene ID: 100512591, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
RNF14provided by VGNC
Official Full Name
ring finger protein 14provided by VGNC
Primary source
VGNC:VGNC:92357
See related
Ensembl:ENSSSCG00000014394
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 28.2), liver (RPKM 21.0) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RNF14 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (143574901..143595601)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (149776388..149797105)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene DAP3 binding cell death enhancer 1 Neighboring gene uncharacterized LOC110259524 Neighboring gene protocadherin 12 Neighboring gene uncharacterized LOC110259525 Neighboring gene uncharacterized LOC106509594 Neighboring gene glucosamine-6-phosphate deaminase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase RNF14

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    143574901..143595601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084946.1 → XP_020940605.1  E3 ubiquitin-protein ligase RNF14 isoform X3

    UniProtKB/TrEMBL
    A0A8D1P4R7
    Conserved Domains (3) summary
    smart00647
    Location:163 → 224
    IBR; In Between Ring fingers
    pfam01485
    Location:251 → 307
    IBR; IBR domain, a half RING-finger domain
    cd16628
    Location:92 → 145
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  2. XM_003124007.4 → XP_003124055.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_003124055.1

    UniProtKB/TrEMBL
    A0A287A9A4, A0A4X1ST30, A0A8D0W386, A0A8D1GV90, F1RM50
    Related
    ENSSSCP00000040523.3, ENSSSCT00000066419.3
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  3. XM_005661773.3 → XP_005661830.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_005661830.1

    UniProtKB/TrEMBL
    A0A287A9A4, A0A4X1ST30, A0A8D0W386, A0A8D1GV90, F1RM50
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  4. XM_021084945.1 → XP_020940604.1  E3 ubiquitin-protein ligase RNF14 isoform X3

    UniProtKB/TrEMBL
    A0A8D1P4R7
    Conserved Domains (3) summary
    smart00647
    Location:163 → 224
    IBR; In Between Ring fingers
    pfam01485
    Location:251 → 307
    IBR; IBR domain, a half RING-finger domain
    cd16628
    Location:92 → 145
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  5. XM_013995290.2 → XP_013850744.1  E3 ubiquitin-protein ligase RNF14 isoform X2

    UniProtKB/TrEMBL
    A0A8D1P354
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:4 → 133
    RWD; RWD domain
    pfam14634
    Location:220 → 255
    zf-RING_5; zinc-RING finger domain

  6. XM_021084944.1 → XP_020940603.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    UniProtKB/TrEMBL
    A0A287A9A4, A0A4X1ST30, A0A8D0W386, A0A8D1GV90, F1RM50
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  7. XM_021084943.1 → XP_020940602.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    UniProtKB/TrEMBL
    A0A287A9A4, A0A4X1ST30, A0A8D0W386, A0A8D1GV90, F1RM50
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  8. XM_003124008.4 → XP_003124056.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    See identical proteins and their annotated locations for XP_003124056.1

    UniProtKB/TrEMBL
    A0A287A9A4, A0A4X1ST30, A0A8D0W386, A0A8D1GV90, F1RM50
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  9. XM_021084947.1 → XP_020940606.1  E3 ubiquitin-protein ligase RNF14 isoform X3

    UniProtKB/TrEMBL
    A0A8D1P4R7
    Conserved Domains (3) summary
    smart00647
    Location:163 → 224
    IBR; In Between Ring fingers
    pfam01485
    Location:251 → 307
    IBR; IBR domain, a half RING-finger domain
    cd16628
    Location:92 → 145
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins

  10. XM_013995289.2 → XP_013850743.1  E3 ubiquitin-protein ligase RNF14 isoform X1

    UniProtKB/TrEMBL
    A0A287A9A4, A0A4X1ST30, A0A8D0W386, A0A8D1GV90, F1RM50
    Conserved Domains (4) summary
    smart00647
    Location:289 → 350
    IBR; In Between Ring fingers
    pfam01485
    Location:377 → 433
    IBR; IBR domain, a half RING-finger domain
    pfam05773
    Location:7 → 133
    RWD; RWD domain
    cd16628
    Location:218 → 271
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.