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pigv phosphatidylinositol glycan anchor biosynthesis class V [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100380028, updated on 25-Apr-2024

Summary

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Official Symbol
pigvprovided by Xenbase
Official Full Name
phosphatidylinositol glycan anchor biosynthesis class Vprovided by Xenbase
Primary source
Xenbase:XB-GENE-965986
See related
Ensembl:ENSXETG00000020693
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See pigv in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (77746443..77749809)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (51954200..51958550)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene AT-rich interaction domain 1A Neighboring gene uncharacterized LOC105946735 Neighboring gene GPN-loop GTPase 2 Neighboring gene G-patch domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
GPI mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    77746443..77749809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002934645.5 → XP_002934691.1  GPI mannosyltransferase 2

    See identical proteins and their annotated locations for XP_002934691.1

    UniProtKB/TrEMBL
    F7DCC5
    Related
    ENSXETP00000044719.2, ENSXETT00000044719.3
    Conserved Domains (1) summary
    cl21590
    Location:13 → 473
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_004911546.3 → XP_004911603.1  GPI mannosyltransferase 2

    See identical proteins and their annotated locations for XP_004911603.1

    UniProtKB/TrEMBL
    F7DCC5
    Conserved Domains (1) summary
    cl21590
    Location:13 → 473
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  3. XM_031896887.1 → XP_031752747.1  GPI mannosyltransferase 2

    UniProtKB/TrEMBL
    F7DCC5
    Conserved Domains (1) summary
    cl21590
    Location:13 → 473
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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