U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [ Sus scrofa (pig) ]

Gene ID: 100188905, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SMARCA1provided by VGNC
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1provided by VGNC
Primary source
VGNC:VGNC:93225
See related
Ensembl:ENSSSCG00000012649
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 24.2), ovary (RPKM 19.8) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SMARCA1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (106039961..106116156, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (121756253..121832168, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257857 Neighboring gene centrin-2-like Neighboring gene OCRL inositol polyphosphate-5-phosphatase Neighboring gene apelin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manipulation of SMARCA2 and SMARCA4 transcript levels in porcine embryos differentially alters development and expression of SMARCA1, SOX2, NANOG, and EIF1. Magnani L, et al. Reproduction, 2009 Jan. PMID 18845624
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable global transcription activator SNF2L1
Names
SNF2L-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    106039961..106116156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003135362.5 → XP_003135410.1  probable global transcription activator SNF2L1 isoform X1

    UniProtKB/TrEMBL
    A0A480JFY5, A0A4X1W9M8, A0A8D0VVK5
    Conserved Domains (7) summary
    PLN03142
    Location:90 → 1072
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:206 → 345
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:862 → 901
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:488 → 615
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:761 → 841
    HAND; HAND
    pfam09111
    Location:916 → 1028
    SLIDE; SLIDE
    pfam13892
    Location:87 → 113
    DBINO; DNA-binding domain

  2. XM_021080851.1 → XP_020936510.1  probable global transcription activator SNF2L1 isoform X11

    UniProtKB/TrEMBL
    A0A8D0T5P6, A0A8D0VYB1, F1RTI9
    Related
    ENSSSCP00000013448.5, ENSSSCT00000013830.5
    Conserved Domains (1) summary
    cl26465
    Location:63 → 1020
    SNF2_N; SNF2 family N-terminal domain

  3. XM_005673893.3 → XP_005673950.1  probable global transcription activator SNF2L1 isoform X4

    UniProtKB/TrEMBL
    A0A8D0VVK5, A0A8D1TVE6, K7GNV1
    Related
    ENSSSCP00000029556.4, ENSSSCT00000032734.4
    Conserved Domains (8) summary
    smart00717
    Location:860 → 901
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00046
    Location:206 → 345
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:862 → 901
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00176
    Location:189 → 469
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:488 → 615
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:761 → 841
    HAND; HAND
    pfam09111
    Location:916 → 1028
    SLIDE; SLIDE
    pfam13892
    Location:87 → 113
    DBINO; DNA-binding domain

  4. XM_005673891.3 → XP_005673948.1  probable global transcription activator SNF2L1 isoform X3

    See identical proteins and their annotated locations for XP_005673948.1

    UniProtKB/TrEMBL
    A0A8D0VVK5
    Conserved Domains (8) summary
    smart00717
    Location:860 → 901
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00046
    Location:206 → 345
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:862 → 901
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00176
    Location:189 → 469
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:488 → 615
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:761 → 841
    HAND; HAND
    pfam09111
    Location:916 → 1028
    SLIDE; SLIDE
    pfam13892
    Location:87 → 113
    DBINO; DNA-binding domain

  5. XM_003360443.4 → XP_003360491.1  probable global transcription activator SNF2L1 isoform X3

    See identical proteins and their annotated locations for XP_003360491.1

    UniProtKB/TrEMBL
    A0A8D0VVK5
    Conserved Domains (8) summary
    smart00717
    Location:860 → 901
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00046
    Location:206 → 345
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:862 → 901
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00176
    Location:189 → 469
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:488 → 615
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:761 → 841
    HAND; HAND
    pfam09111
    Location:916 → 1028
    SLIDE; SLIDE
    pfam13892
    Location:87 → 113
    DBINO; DNA-binding domain

  6. XM_021080854.1 → XP_020936513.1  probable global transcription activator SNF2L1 isoform X14

    UniProtKB/TrEMBL
    A0A4X1W7H3, A0A5G2R1U6, A0A8D0VVK2
    Conserved Domains (1) summary
    cl26465
    Location:90 → 1009
    SNF2_N; SNF2 family N-terminal domain

  7. XM_021080853.1 → XP_020936512.1  probable global transcription activator SNF2L1 isoform X13

    UniProtKB/TrEMBL
    A0A4X1W7H3, A0A5G2R1U6
    Related
    ENSSSCP00000071156.2, ENSSSCT00000088402.2
    Conserved Domains (1) summary
    cl26465
    Location:90 → 1009
    SNF2_N; SNF2 family N-terminal domain

  8. XM_021080850.1 → XP_020936509.1  probable global transcription activator SNF2L1 isoform X10

    UniProtKB/TrEMBL
    A0A8D0T5P6
    Conserved Domains (1) summary
    cl26465
    Location:63 → 1020
    SNF2_N; SNF2 family N-terminal domain

  9. XM_021080847.1 → XP_020936506.1  probable global transcription activator SNF2L1 isoform X7

    UniProtKB/TrEMBL
    A0A4X1W7N5, A0A8D0VWJ8
    Conserved Domains (1) summary
    cl26465
    Location:90 → 1037
    SNF2_N; SNF2 family N-terminal domain

  10. XM_021080846.1 → XP_020936505.1  probable global transcription activator SNF2L1 isoform X5

    UniProtKB/TrEMBL
    A0A8D0VWJ8
    Conserved Domains (1) summary
    cl26465
    Location:90 → 1037
    SNF2_N; SNF2 family N-terminal domain

  11. XM_013986407.2 → XP_013841861.1  probable global transcription activator SNF2L1 isoform X5

    UniProtKB/TrEMBL
    A0A8D0VWJ8
    Conserved Domains (1) summary
    cl26465
    Location:90 → 1037
    SNF2_N; SNF2 family N-terminal domain

  12. XM_003360444.4 → XP_003360492.1  probable global transcription activator SNF2L1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1W2H5, A0A8D0VWJ8, K7GLQ2
    Related
    ENSSSCP00000028784.3, ENSSSCT00000033549.3
    Conserved Domains (7) summary
    PLN03142
    Location:90 → 1060
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:206 → 345
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:850 → 889
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:488 → 603
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:749 → 829
    HAND; HAND
    pfam09111
    Location:904 → 1016
    SLIDE; SLIDE
    pfam13892
    Location:87 → 113
    DBINO; DNA-binding domain

  13. XM_021080848.1 → XP_020936507.1  probable global transcription activator SNF2L1 isoform X9

    UniProtKB/TrEMBL
    A0A4X1W2J9, A0A8D0T5P6
    Related
    ENSSSCP00000071905.1, ENSSSCT00000071106.1
    Conserved Domains (1) summary
    cl26465
    Location:63 → 1031
    SNF2_N; SNF2 family N-terminal domain

  14. XM_005673895.3 → XP_005673952.1  probable global transcription activator SNF2L1 isoform X6

    UniProtKB/TrEMBL
    A0A8D0T5P6
    Conserved Domains (7) summary
    PLN03142
    Location:63 → 1043
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:177 → 316
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:833 → 872
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:459 → 586
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:732 → 812
    HAND; HAND
    pfam09111
    Location:887 → 999
    SLIDE; SLIDE
    pfam13892
    Location:66 → 84
    DBINO; DNA-binding domain

  15. XM_021080855.1 → XP_020936514.1  probable global transcription activator SNF2L1 isoform X15

    UniProtKB/TrEMBL
    A0A8D0T5P6
    Conserved Domains (1) summary
    cl26465
    Location:63 → 991
    SNF2_N; SNF2 family N-terminal domain

  16. XM_021080852.1 → XP_020936511.1  probable global transcription activator SNF2L1 isoform X12

    UniProtKB/TrEMBL
    A0A8D0VVK2
    Conserved Domains (1) summary
    cl26465
    Location:90 → 1020
    SNF2_N; SNF2 family N-terminal domain

  17. XM_005673896.3 → XP_005673953.1  probable global transcription activator SNF2L1 isoform X8

    UniProtKB/TrEMBL
    A0A8D0VVK2
    Conserved Domains (7) summary
    PLN03142
    Location:90 → 1032
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:206 → 345
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:822 → 861
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:488 → 615
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:721 → 801
    HAND; HAND
    pfam09111
    Location:876 → 988
    SLIDE; SLIDE
    pfam13892
    Location:87 → 113
    DBINO; DNA-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.