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kmt5a.S lysine methyltransferase 5A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100158384, updated on 3-Jul-2024

Summary

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Official Symbol
kmt5a.S
Official Full Name
lysine methyltransferase 5A S homeolog
Primary source
Xenbase:XB-GENE-865841
Locus tag
XELAEV_18010609mg
See related
EnsemblRapid:ENSXLAG00005008292
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
kmt5a; setd8; kmt5a-a; setd8-a
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Genomic context

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See kmt5a.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (149573736..149590707, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (133798324..133815312, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene transmembrane p24 trafficking protein 2 S homeolog Neighboring gene Rab interacting lysosomal protein-like 1 S homeolog Neighboring gene strawberry notch homolog 1 S homeolog Neighboring gene cyclin-dependent kinase 2 associated protein 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables histone H4K20 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone H4K20 monomethyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone methyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
N-lysine methyltransferase KMT5A-A
Names
N-lysine methyltransferase SETD8-A
SET domain containing (lysine methyltransferase) 8
SET domain-containing protein 8-A
histone-lysine N-methyltransferase KMT5A-A
histone-lysine N-methyltransferase SETD8-A
lysine (K)-specific methyltransferase 5A S homeolog
lysine-specific methylase 5A-A
NP_001121300.1
XP_018087660.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127828.1 → NP_001121300.1  N-lysine methyltransferase KMT5A-A

    See identical proteins and their annotated locations for NP_001121300.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124952
    UniProtKB/Swiss-Prot
    Q08AY6
    UniProtKB/TrEMBL
    A0A974DV13
    Related
    ENSXLAP00005023866.1, ENSXLAT00005024574.1
    Conserved Domains (1) summary
    pfam00856
    Location:210 → 320
    SET; SET domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    149573736..149590707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018232171.2 → XP_018087660.1  N-lysine methyltransferase KMT5A-A isoform X1

    UniProtKB/TrEMBL
    A0A8J0TPU6
    Related
    ENSXLAP00005023878.1, ENSXLAT00005024586.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08AY6.1 GenPept UniProtKB/Swiss-Prot:Q08AY6

Gene LinkOut

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