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TTF2 transcription termination factor 2 [ Sus scrofa (pig) ]

Gene ID: 100156166, updated on 17-Aug-2024

Summary

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Official Symbol
TTF2provided by VGNC
Official Full Name
transcription termination factor 2provided by VGNC
Primary source
VGNC:VGNC:94563
See related
Ensembl:ENSSSCG00000006733
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 17.8), lung (RPKM 11.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TTF2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (103632377..103676478, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (113596173..113640563, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene V-set domain containing T cell activation inhibitor 1 Neighboring gene proteasome assembly chaperone 2-like Neighboring gene tripartite motif containing 45 Neighboring gene uncharacterized LOC110260337 Neighboring gene CD101 molecule Neighboring gene prostaglandin F2 receptor inhibitor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription termination factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    103632377..103676478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001929357.7 → XP_001929392.3  transcription termination factor 2

    UniProtKB/TrEMBL
    A0A480QIM1, A0A4X1STL9
    Related
    ENSSSCP00000020113.4, ENSSSCT00000031433.4
    Conserved Domains (4) summary
    cd00046
    Location:595 → 772
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:577 → 937
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:994 → 1110
    Helicase_C; Helicase conserved C-terminal domain
    pfam06839
    Location:4 → 39
    zf-GRF; GRF zinc finger
Nucleotide Protein
Heading Accession and Version

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